CB290669

Overview
NameCB290669
Unique NameCB290669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:21..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.657e-19
Identity = 60/199 (30.15%), Postives = 97/199 (48.74%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A  AE K     +L  +++ Y  I +    NV +  L  +R  LRG +++ + +NT+++  I+  A++ G      LI  +QG  G++ T+ +              APA+ G+  P DVV+P G T + P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY
Sbjct:    2 AHVAEWKKKEVEELTNIIKSYPVIALVDVANVPAYPLSKMREKLRGKALLRVSRNTLIELAIKRAAQELGKPELEKLIDHIQGGAGILATEMNPFKLYKLLEESKTPAPAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVY 200          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.657e-19
Identity = 60/186 (32.26%), Postives = 94/186 (50.54%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            L +LL+    I +     V + QLQ IR  +R    + M +NT+MKR I   AE+TGN  F  L+  +     +I T+ +              AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     ++++G+ V    A +L+ L I+P + GL V  VYE+G +Y
Sbjct:   21 LKELLKSSNIIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLMKRAIEEVAEETGNPEFAKLVDYMDKGAAIIATEMNPFKLYKTLDESKSPAPVKGGAIAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVLSALDIKPVTVGLNVLGVYEDGVIY 206          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.722e-18
Identity = 60/199 (30.15%), Postives = 95/199 (47.74%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A  AE K     +L  +++ Y  I +     V +  L  +R  LRG +++ + +NT+++  I+  A++ G      LI  +QG   ++ T+ +              APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY
Sbjct:    2 AHVAEWKKKEVEELANIIKSYPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELGQPELEKLIDHIQGGAAILATEMNPFKLYKLLEESKTPAPAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVY 200          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.011e-18
Identity = 60/193 (31.09%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  205 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            KI    KL +LL+    + +     V + QLQ IR  +RG   + M +NT+++R I+  AE+TGN  F  L   +     +I T  +              AP + G VAP D+ V  G+TG+ P       + + IP  I KG + I     + + G+ V    A +L+ LGI+P + GL + + YE+G +Y
Sbjct:   14 KIEEVNKLKELLKNGQIVALVDMMEVPARQLQEIRDKIRGTMTLKMSRNTLIERAIKEVAEETGNPEFAKLADYIDKGAAIITTDMNPFKLYKTLEESKSPAPIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHKLAVVLSALGIKPVTVGLNLLAAYEDGVIY 206          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.548e-18
Identity = 57/199 (28.64%), Postives = 99/199 (49.75%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A  AE K     +L  L++ Y  + +A   ++ + QLQ +R+ LR  +++ M K T++   +     +  N   L+    ++G   LIFT  +              APA+ G +AP D+VVP G+TG  P       Q + IP KI KG + +     +++ G+++    A +L +L I+P   G+ +++ YEN +VY
Sbjct:    2 AHVAEWKKKEVQELHDLIKGYEVVGIANLADIPARQLQKMRQTLRDSALIRMSKKTLISLALEKAGRELENVDSLS--DYMEGQPALIFTDMNPFKLFKILEDSKTPAPAKPGAIAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYENQTVY 198          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.458e-17
Identity = 54/187 (28.88%), Postives = 94/187 (50.27%), Query Frame = 1
Query:  223 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            +L   LE Y  + V     + S QLQ++RR L G + + + +NT+M+R +    +  G      L+  ++G VGLI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I  G+++++    ++  G++V S  + +L++LGI P   GL ++ V   G ++
Sbjct:   21 ELVAFLERYESVGVVDITGIPSRQLQDMRRDLHGTAALRVSRNTLMERALNEGGDGLG-----ELVEHVEGQVGLIGTNDNPFGLYQQLEESKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVLSELGIEPKEVGLDLRGVSSEGVLF 202          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_META3 (Acidic ribosomal protein P0 homolog OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.487e-17
Identity = 58/193 (30.05%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  205 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            KI     L +LL+E   I +     V + QLQ IR  +R    + M +NT++KR I   AE++ +  F  L   L+    ++ T  +              AP + G +AP D+VV  G+TG+ P       +   +P  I+KG + I     ++++G+ V    A +L+ LGI+P   GL + + YE+G VY
Sbjct:   13 KIEEVNNLKKLLKEGQVIALVDMMEVPAVQLQEIRDNIRDLMTLRMSRNTLIKRAIEELAEESNDPKFAKLAECLERGAAIVITDMNPFKLYKTLEDGKAPAPIKAGAIAPSDIVVEAGSTGMPPGPFLGELKGAGLPAVIDKGKIAIKDDTVIVKEGEVVSPKVAVVLSALGIKPTKVGLDLLAAYEDGIVY 205          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.248e-17
Identity = 60/204 (29.41%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  172 EMVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            E  VKA  A  KI     L  L++    + +    +V + QLQ IR  +R    + M +NT++ R ++  AE+  N     L   ++    ++ T  +              AP R G +AP D+ V  G+TG+ P       + + IP  I KG + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y
Sbjct:    2 ETKVKAHVAPWKIEEVKTLKGLIKSKPVVAIVDMMDVPAPQLQEIRDKIRDKVKLRMSRNTLIIRALKEAAEELNNPKLAELANYVERGAAILVTDMNPFKLYKLLEENKSPAPVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIY 205          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.242e-17
Identity = 55/187 (29.41%), Postives = 89/187 (47.59%), Query Frame = 1
Query:  223 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            +L   +E Y  + V     + S QLQ++RR L G + V M +NT++ R +        N  F  L   + G V LI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I  G++ +     ++ +G++V    A +LA+LGI P   GL ++ V+  G ++
Sbjct:   22 ELVDFIESYESVGVVGVAGIPSRQLQSMRRELHGSAAVRMSRNTLVNRAL-----DEVNDGFEELKEYIAGQVALIGTNDNPFALFKELEASKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVGLDLRGVFSEGVLF 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.451e-17
Identity = 61/200 (30.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A  AE K     +L +L++ Y  I +    ++ +  L  +RR +R +  +L + +NT+++  I+  A++ G      L+  +    G++ T  +              APA+ G V P DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY
Sbjct:    2 AHVAEWKKKEVEELAKLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVY 201          
The following BLAST results are available for this feature:
BLAST of CB290669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLA0_THEON2.657e-1930.15Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_METMP2.657e-1932.26Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_PYRKO1.722e-1830.15Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METTL5.011e-1831.09Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METTH8.548e-1828.64Acidic ribosomal protein P0 homolog OS=Methanobact... [more]
RLA0_NATPD1.458e-1728.88Acidic ribosomal protein P0 homolog OS=Natronomona... [more]
RLA0_META32.487e-1730.05Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METJA3.248e-1729.41Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_HALVO4.242e-1729.41Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_PYRHO9.451e-1730.50Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290669 ID=CB290669; Name=CB290669; organism=Citrus sinensis; type=EST; length=780bp
GCACTATGGTTTTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTT
GAGGTTAAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTG
CTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAA
CAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGA
GAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACA
CCCAAATATTGGTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAG
AACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAA
CACTATGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACA
CTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATT
TTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAA
GGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTG
TTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAG
GTGCTTAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCAC
ACCTGTGGAGCTTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAG
CCCTGCTTGCAAAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTGTC
CAGTCTGTCTATGAAAACGGTTCCGTCTAC
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