CB290669

Overview
NameCB290669
Unique NameCB290669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:21..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.234e-16
Identity = 54/199 (27.14%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A  AE K     +L  L+++Y  I +    N+ + QLQ +R+ L   +V+ M K  ++   +        N   ++L   ++G V +I T+ +              APA+ G +A  D+V+P G+TG +P       Q + IP KI+KG + +     L+  G++V ++ A+ L+++ I P   G+ +++VYE  ++Y
Sbjct:    2 AHVAEWKKEEVNELKSLIDKYDVIGIVDLLNIPAKQLQEMRKSLHNKAVIRMSKKNLIDLALEDCNASKNN--IVDLSEHMEGQVAVIATEMNPFKLYKILEDSKTSAPAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIY 198          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METKA (Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri GN=rplP0 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.612e-16
Identity = 59/198 (29.80%), Postives = 98/198 (49.49%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLN-LIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            AE K     +L +L++EY  + +   + + + QLQ IR  LR  D+++ M +NT+M+  +    EK      L  L+  ++G V  IFT  D              APA+ G +AP D+VVP G T  +P    S  Q   +P +I  G V I     L+++G+++    A +L KL I P   G+ + ++   G+++
Sbjct:   18 AEWKRREVKELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSRNTLMRIALE---EKLDERPELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEPGPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEEIDEKTAEILKKLEIEPMEVGVDIVAIVAEGTLF 212          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.750e-16
Identity = 56/200 (28.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A  AE K     +L  L++ Y  + +    ++ +  L  +RR +R ++ +L + +NT+++  I+  A++ G      LI  ++G  G++ T  +              APA+ G   P DVV+P G T L P       Q + IP +I +G V I     +++ G+++    A +L  LGI+P   GL + +VYE+G +Y
Sbjct:    2 AHVAEWKKKEVEELANLIKSYPVVALVDVSSMPAYPLSQMRRLIRENNGLLRVSRNTLIELAIKKVAQELGKPELEKLINYIEGGAGILVTTMNPFKLYKFLQQNRQPAPAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIY 201          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.365e-15
Identity = 58/200 (29.00%), Postives = 95/200 (47.50%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A  AE K     +L  L++ Y  I +    ++ +  L  +RR +R +  +L + +NT+++  I+  A++ G      L   +    G++ T  +              APA+ G V P DVV+P G T L P       Q + IP +I +G V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY
Sbjct:    2 AHVAEWKKKEVEELANLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAQELGKPELEKLAEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVY 201          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.040e-15
Identity = 50/188 (26.60%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  220 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A+L  L   +  I +    ++ + QLQ +R+ L  ++++ M +    K  I++  E +       L   L+G   ++FTK +              APA+ G +AP D+VVP G+T   P       Q + IP KI+KG++ +    +++ +G+++  + A +L KL I P   G+ + +V E  ++Y
Sbjct:   13 AELEDLTNSHEIIGIVNLADIPAKQLQTMRKSLGDNAILKMSR----KNFIKIALENSDKEEVEGLADYLEGQPAMVFTKMNPFKLFKILEDSKTEAPAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIY 196          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.040e-15
Identity = 49/186 (26.34%), Postives = 96/186 (51.61%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            + +++E Y  + V     + S QLQ++RR L G + + + +NT+++R +        +    +L   + G VGLI T  +              AP   G VAP D+V+P G+TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P   GL +++V+ +G ++
Sbjct:   23 IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL-----DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLF 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.971e-15
Identity = 54/199 (27.14%), Postives = 93/199 (46.73%), Query Frame = 1
Query:  187 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A  AE K     +L ++++ +  I +     V +  L  +R  LRG +++ + +NT+++  I+  A++        L   ++G   ++ T+ +              APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+  +Y
Sbjct:    2 AHVAEWKKKEVEELTKIIKSHPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELNKPDLEKLADYIEGGAAILATEMNPFKLYKLLEESKTPAPAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDDIIY 200          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.279e-13
Identity = 52/196 (26.53%), Postives = 87/196 (44.39%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            A+ KI +   L   +       + +   + +N+ Q IR  +R  + + + +     R +R+  E TG    + L     G V LI T                 APA+ G +A  D+V+ P  T   P  + S FQ   +P  I KG + I + V  ++KGD +   +A +L  L I P + GL + + YE+G ++
Sbjct:    5 AQWKIDFVKNLENEINSRKVAAIVSIKGLRNNEFQKIRNSIRDKARIKVSR----ARLLRLAIENTGKNNIVKLKDYAHGQVALITTDESPKKIYDILEKSKTKAPAKGGEIAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDGLIF 196          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_SULTO (Acidic ribosomal protein P0 homolog OS=Sulfolobus tokodaii GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.109e-12
Identity = 55/195 (28.21%), Postives = 86/195 (44.10%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSV 777
            A+ KI    +L Q L EY  I++A  +   +++L +IR+ +RG + + + KNT+        A K        L P L G    IFT  +                A  G  A  +VV+P G+TG+      S F  L I TK+  G + +     + + GD +      +L KLGI P    L ++  Y+NG +
Sbjct:   14 AKWKIEEVKELEQKLREYHTIIIANIEGFPADKLHDIRKKMRGMAEIKVTKNTLFGI-----AAKNAGLDVSKLEPYLTGPNAFIFTNKNPFEIQLFLSKFKLKRYAMPGDKADEEVVIPAGDTGMPAGPALSIFGKLKIKTKVQDGKIHVTQDTVIAKPGDPIPPDAIPILQKLGIMPVHIKLNIKVAYDNGLI 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_ARCFU (Acidic ribosomal protein P0 homolog OS=Archaeoglobus fulgidus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.154e-12
Identity = 49/200 (24.50%), Postives = 94/200 (47.00%), Query Frame = 1
Query:  181 VKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSV 777
            V+ S  E K+    ++ +++     + + +  NV + Q+Q IRR  RG + + + KNT+++R +    +  G   +L L   L   + +I    +              +P +   V+P+DVVV  G T + P    +  Q+  +P  I KG V +     +++ G+ V    A  L +L I+P   GL V+++ ++G +
Sbjct:    4 VRGSPPEYKVRAVEEIKRMISSKPVVAIVSFRNVPAGQMQKIRREFRGKAEIKVVKNTLLERAL----DALGGD-YLKLKDYLGDQIAIITADENPFRLFRMIEDTKVPSPLKPNQVSPVDVVVNEGPTPIPPGPLMAELQMAGLPVAIEKGKVVVKATTTVVKAGEVVRPEVARALERLDIKPIKIGLDVKAMLDSGVI 198          
The following BLAST results are available for this feature:
BLAST of CB290669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLA0_METS31.234e-1627.14Acidic ribosomal protein P0 homolog OS=Methanobrev... [more]
RLA0_METKA1.612e-1629.80Acidic ribosomal protein P0 homolog OS=Methanopyru... [more]
RLA0_PYRFU2.750e-1628.00Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRAB1.365e-1529.00Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METST3.040e-1526.60Acidic ribosomal protein P0 homolog OS=Methanospha... [more]
RLA0_HALMA3.040e-1526.3450S ribosomal protein L10E OS=Haloarcula marismort... [more]
RLA0_THEGJ3.971e-1527.14Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_PICTO8.279e-1326.53Acidic ribosomal protein P0 homolog OS=Picrophilus... [more]
RLA0_SULTO4.109e-1228.21Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_ARCFU9.154e-1224.50Acidic ribosomal protein P0 homolog OS=Archaeoglob... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290669 ID=CB290669; Name=CB290669; organism=Citrus sinensis; type=EST; length=780bp
GCACTATGGTTTTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTT
GAGGTTAAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTG
CTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAA
CAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGA
GAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACA
CCCAAATATTGGTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAG
AACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAA
CACTATGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACA
CTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATT
TTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAA
GGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTG
TTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAG
GTGCTTAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCAC
ACCTGTGGAGCTTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAG
CCCTGCTTGCAAAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTGTC
CAGTCTGTCTATGAAAACGGTTCCGTCTAC
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