CB290669

Overview
NameCB290669
Unique NameCB290669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:21..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_SULIY (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.196e-11
Identity = 52/195 (26.67%), Postives = 87/195 (44.62%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSV 777
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K    +   L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGISTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLV 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_SULIN (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.196e-11
Identity = 52/195 (26.67%), Postives = 87/195 (44.62%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSV 777
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K    +   L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGISTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLV 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_SULIL (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.196e-11
Identity = 52/195 (26.67%), Postives = 87/195 (44.62%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSV 777
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K    +   L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGISTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLV 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_SULIM (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11
Identity = 52/195 (26.67%), Postives = 86/195 (44.10%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSV 777
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K        L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGINIEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLV 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_SULIK (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.561e-11
Identity = 52/195 (26.67%), Postives = 86/195 (44.10%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSV 777
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K        L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGINIEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLV 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_SULIA (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.16.27) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 52/195 (26.67%), Postives = 86/195 (44.10%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSV 777
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K        L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGINTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLV 203          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 44/186 (23.66%), Postives = 84/186 (45.16%), Query Frame = 1
Query:  226 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            + +L++ +    +   + + + ++Q IRR L+  +V+ + +N++ +R +    E     +   +   L     L+FT                 +P + G +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L KL I P   GL +++VY+NG++Y
Sbjct:   22 IMELIQSHKVFGMVGIEGILATKIQKIRRDLKDVAVLKVSRNSLTERALNQLGE-----SIPEMNKYLDKQTALVFTNESPFKLYKVLEQTKTPSPIKGGAIAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIY 202          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METBU (Acidic ribosomal protein P0 homolog OS=Methanococcoides burtonii (strain DSM 6242) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.478e-11
Identity = 48/183 (26.23%), Postives = 84/183 (45.90%), Query Frame = 1
Query:  235 LLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            L+E Y    V   + + + QLQ++RR L+  +V+ + +N++ +R +   ++         +   +     LIFTK +              +P + G+VA  D++V  G T   P       Q   IP  I+ G V I     + + G+ V    AA+L +L I P   GL +++V E GS++
Sbjct:   24 LIESYPLFGVIGIEGIPAKQLQSMRRDLKDFAVLKVCRNSLTRRALDQSSDDV-----KKMDDYIDVQTALIFTKQNPFKLYKLLEKSKTPSPIKAGMVATSDIIVEKGPTSFPPGPILGDMQGAGIPAAIDGGKVVIKETKAVAKAGEVVSQKLAAMLTRLEIYPLEVGLDLRAVLEEGSIF 201          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_METMA (Acidic ribosomal protein P0 homolog OS=Methanosarcina mazei GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.543e-11
Identity = 44/184 (23.91%), Postives = 83/184 (45.11%), Query Frame = 1
Query:  232 QLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVY 780
            +L++ +    +   + + + ++Q IRR L+  +V+ + +NT+ +R +    E     +   +   L     LIFT                 +P + G +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L+KL I P   GL +++ Y++G++Y
Sbjct:   24 ELIQSHKVFGMVRIEGILATKIQKIRRDLKDVAVLKVSRNTLTERALNQLGE-----SIPEMTRYLDNQTALIFTNESPFKLYKLLEQTKTPSPIKAGAIAPEDIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEAVPQKLATMLSKLEIYPLIVGLDLRAAYDDGTIY 202          
BLAST of CB290669 vs. ExPASy Swiss-Prot
Match: RLA0_SULSO (Acidic ribosomal protein P0 homolog OS=Sulfolobus solfataricus GN=rplP0 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.933e-11
Identity = 53/195 (27.18%), Postives = 84/195 (43.08%), Query Frame = 1
Query:  196 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSV 777
            A  K+    +L +L++    IL+   +   +++L  IR+ LRG + + + KNT+ K      A K        L   L G    IFTK +                A  G  A  +VV+P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGNLEGFPADKLHEIRKKLRGKATIKVTKNTLFKI-----AAKNAGIDIEKLEQYLTGPNVFIFTKDNPFITNMFFENYKLRRYAMPGDKAEEEVVIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPAEALPILQKLGIMPVYVKLKIKVAYHEGLV 203          
The following BLAST results are available for this feature:
BLAST of CB290669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RLA0_SULIY1.196e-1126.67Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIN1.196e-1126.67Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIL1.196e-1126.67Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIM1.561e-1126.67Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIK1.561e-1126.67Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIA2.663e-1126.67Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_METBF2.663e-1123.66Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]
RLA0_METBU3.478e-1126.23Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_METMA4.543e-1123.91Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]
RLA0_SULSO5.933e-1127.18Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290669 ID=CB290669; Name=CB290669; organism=Citrus sinensis; type=EST; length=780bp
GCACTATGGTTTTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTT
GAGGTTAAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTG
CTTCGTCTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAA
CAAAAGTAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGA
GAAGAAGATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACA
CCCAAATATTGGTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAG
AACATTCGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAA
CACTATGATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACA
CTGCCTTTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATT
TTCACAAAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAA
GGTTGGAGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTG
TTCCTCCCGGCAACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAG
GTGCTTAACATTCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCAC
ACCTGTGGAGCTTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAG
CCCTGCTTGCAAAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTGTC
CAGTCTGTCTATGAAAACGGTTCCGTCTAC
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