CB290675

Overview
NameCB290675
Unique NameCB290675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig144 contig Csv1_Contig144:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290675 vs. ExPASy Swiss-Prot
Match: MMA1_MYCBO (Methoxy mycolic acid synthase 1 OS=Mycobacterium bovis GN=mma1 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.500e-12
Identity = 30/81 (37.04%), Postives = 50/81 (61.73%), Query Frame = 3 
Query:  471 YDLNNELFSLFLDKSMTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 713
            YD++++ F+LFLD +  Y+CA F+ +   LE  Q+ KV + ++K  +  G  +LD+GCGWG   +  V++      G+TLS
Sbjct:   15 YDISDDFFALFLDPTWVYTCAYFERDDMTLEEAQLAKVDLALDKLNLEPGMTLLDVGCGWGGALVRAVEKYDVNVIGLTLS 95
The following BLAST results are available for this feature:
BLAST of CB290675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MMA1_MYCBO3.500e-1237.04Methoxy mycolic acid synthase 1 OS=Mycobacterium b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290675 ID=CB290675; Name=CB290675; organism=Citrus sinensis; type=EST; length=713bp
CGCACTAGGATTGTGCTGTTTTGAGCAACCCAAAGCACATGGCACCGTCT
CTGCTGGAAAAAGGGGCGCGACTTTTTGTTGCTAGATTTTTGAGACGATA
TATCTCTACTGGCCGTTTAATTTTGCTGGAGGAAGGAGGCACCATTTTCG
CTTTCGAGGGAACCCTCAGAAACAGTCCTCTGAAAACTGTTTTGAGAATT
CATAATCCCCAATTTTACTGGAAGGTTATGACAGAGGCTGATTTAGGCCT
CGCAGATTCCTATATCAACGATTTTTCTTTGCTGTTAAATGTATTTCAGA
TTGTGATTGCGAACCAAGATTTCGATTCTTCCACATCGAAATTGAAAAAG
AAGAGGGGTTGGTGGTCACCAATGTTCTTCACAGCTAGTATTGCATCTGC
AAAATATTTCTTTCGGAATATTTCAAGGAAGAATTCTCTCACACAAGCTC
GCAGGAATGTCTCTCGTCATTATGATCTGAACAATGAACTTTTTTCTCTG
TTCTTGGACAAGTCAATGACATACTCATGTGCGATATTTAAGAGCGAACA
TGAAGACTTGGAAGTTGGACAAATGAGAAAAGTTTCTGTTCTGATTGAGA
AAGCAAGAGTTAGTAAGGGGCAAGAAGTTCTTGATATTGGATGTGGGTGG
GGAACCTTAGCCATTGAAATAGTCAAGCAAACTGGATGCAAGTATACAGG
CATAACTTTGTCT
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