CB290676

Overview
NameCB290676
Unique NameCB290676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:18..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = -1
Query:  213 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 611
            G++KTA+A    + G+G ++IN  P+EL  PE+ R K  EP+ L G    N VD+ +RV GGG   Q  A R  IA+ LV       D  S  ++K+  V+YDRT+LV DPRR EPKK+GGRGARAR QK YR
Sbjct:  158 GKRKTAIARGTIREGKGRVRINKVPVELYTPELARLKIMEPLKLAG-DVINDVDINVRVVGGGIVGQAEAARMVIARGLV-------DWTSDMDLKEKFVQYDRTMLVGDPRRSEPKKYGGRGARARRQKSYR 282          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS9_METST (30S ribosomal protein S9P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps9p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.068e-26
Identity = 68/137 (49.64%), Postives = 82/137 (59.85%), Query Frame = -1
Query:  213 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 623
            V   G++KTA+A    K G G +K+N  P+EL EPE+ R K FEP+ L G    N VD+ +RV GGG   Q  A R  IAK LV +            +KD  V+YDRT+LV DPRR E KKFGG GARAR QK YR
Sbjct:    5 VHTSGKRKTAIARGTVKEGTGRVKVNRKPVELYEPELARLKIFEPLELAG-DIVNSVDINVRVVGGGIMGQAEAARMVIAKGLVEY-------TGDMNLKDRYVQYDRTMLVGDPRRSESKKFGGPGARARKQKSYR 133          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS9_METKA (30S ribosomal protein S9P OS=Methanopyrus kandleri GN=rps9p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.546e-25
Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = -1
Query:  213 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 623
            VQ  G++KTA+A    + G G +++N  P+ ++EPE+ R K  EP+++ G    + VD+ ++V+GGG  SQ  A R +IA+ LV +           +++D  + YDR +L  DPRR EPKKFGGRGARAR QK YR
Sbjct:    5 VQTTGKRKTAIARAVIREGEGRVRVNKRPVNIIEPEMARMKIMEPLIIAGEDIVSQVDIDVKVQGGGWMSQAEAARIAIARGLVEW-------TGDPDLRDAYMAYDRHMLKGDPRRKEPKKFGGRGARARRQKSYR 134          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS9_PYRHO (30S ribosomal protein S9P OS=Pyrococcus horikoshii GN=rps9p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = -1
Query:  213 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKFYR 623
            +Q  G++KTA+A    + GRG ++ING P+E++EPEI RF   EP++L G   +N VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K     +G RA+ QK YR
Sbjct:    4 IQTTGKRKTAIARAVIREGRGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS9_PYRAB (30S ribosomal protein S9P OS=Pyrococcus abyssi GN=rps9p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.444e-25
Identity = 61/139 (43.88%), Postives = 87/139 (62.59%), Query Frame = -1
Query:  213 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKFYR 623
            +Q  G++KTA+A    + G+G ++ING P+ELVEPEI RF   EP++L G   +N VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K     +G RA+ QK YR
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVELVEPEIARFTILEPLILAGEEIWNSVDIDVKVQGGGFMGQAEAARIAIARALVEW-------TGDMNLKEKFIKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS9_PYRFU (30S ribosomal protein S9P OS=Pyrococcus furiosus GN=rps9p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.874e-25
Identity = 59/139 (42.45%), Postives = 87/139 (62.59%), Query Frame = -1
Query:  213 VQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKK--FGGRGARARFQKFYR 623
            +Q  G++KTA+A    + G+G ++ING P+E++EPEI RF   EP++L G   +N VD+ ++V+GGG   Q  A R +IA+ALV +            +K+  ++YDRT+LV DPRR EP K     +G RA+ QK YR
Sbjct:    4 IQTTGKRKTAIARAVIREGKGRVRINGKPVEIIEPEIARFTILEPLILAGEEIWNSVDIDVKVEGGGFMGQAEAARMAIARALVEW-------TGDMSLKEKFMKYDRTMLVGDPRRTEPHKPNRSTKGPRAKRQKSYR 135          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS9_THEVO (30S ribosomal protein S9P OS=Thermoplasma volcanium GN=rps9p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.890e-23
Identity = 62/133 (46.62%), Postives = 84/133 (63.16%), Query Frame = -1
Query:  213 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 611
            G++KTAVA    K+G+G+I ING P EL   E+LR K  EP+  L   +  G+D+ ++VKGGG T Q  A R +IA+ +V F Q         E++++  +YDRTL+V D R   PKK GGRGARA+ QK YR
Sbjct:    8 GKRKTAVARAVVKKGKGIITINGTPAELYPVEVLRNKILEPV-KLAEDKAKGIDVTVKVKGGGVTGQADASRTAIARGIVKFLQ-------DNELENLFRQYDRTLIVNDVRIKLPKKPGGRGARAKKQKSYR 132          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS9_HALSA (30S ribosomal protein S9P OS=Halobacterium salinarium GN=rps9p PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.498e-23
Identity = 61/133 (45.86%), Postives = 78/133 (58.65%), Query Frame = -1
Query:  213 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 611
            G+KKTAVA      G G ++IN  P+ELVEPE+ R K  EP  + G      VD+ I V GGG   Q  A+R +IA+ LV  Y          E++D    +DR+LLV D R+ E KK+GG GARAR+QK YR
Sbjct:    7 GKKKTAVARATVSDGEGRVRINSQPVELVEPEMARLKMLEPFRISGSDLRGDVDIDIDVAGGGFAGQADAVRTAIARGLVEHY-------GDAELRDAFREFDRSLLVNDVRQRESKKWGGPGARARYQKSYR 132          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS9_THEAC (30S ribosomal protein S9P OS=Thermoplasma acidophilum GN=rps9p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 60/133 (45.11%), Postives = 88/133 (66.17%), Query Frame = -1
Query:  213 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 611
            G++KTAVA    K+G+G++ ING P+EL    +LR K  EP LL+   +   +D+ ++V+GGG T Q  A R +IA+A+V    KY+++    E++++  +YDRTL+V D R   PKK GGRGARA+ QK YR
Sbjct:    5 GKRKTAVARAVAKKGKGIVTINGYPVELYPVRVLRNKIMEP-LLIAEDKAKDLDIAVKVRGGGVTGQADASRTAIARAIV----KYLND---TELENLFRQYDRTLIVNDVRIKLPKKAGGRGARAKKQKSYR 129          
BLAST of CB290676 vs. ExPASy Swiss-Prot
Match: RS9_HALMA (30S ribosomal protein S9P OS=Haloarcula marismortui GN=rps9p PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.600e-22
Identity = 57/133 (42.86%), Postives = 81/133 (60.90%), Query Frame = -1
Query:  213 GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKFYR 611
            G+KKTAVA    + G G ++I+  P+ELV+PE+ + K  EP  +        VD+ + V+GGG   Q  A R +IA+ L       VD  +  E++D  + +DR+LLV D R+ EPKK+GG GARAR+QK YR
Sbjct:    7 GKKKTAVARATVREGEGRVRIDSQPVELVDPELAQLKMLEPFRIAEDDLRGEVDVEVSVEGGGVMGQADAARTAIARGL-------VDHTNDAELRDAFMEFDRSLLVNDVRQSEPKKWGGPGARARYQKSYR 132          
The following BLAST results are available for this feature:
BLAST of CB290676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
RLSX_METTH2.385e-2648.87Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RS9_METST4.068e-2649.6430S ribosomal protein S9P OS=Methanosphaera stadtm... [more]
RS9_METKA1.546e-2543.0730S ribosomal protein S9P OS=Methanopyrus kandleri... [more]
RS9_PYRHO3.444e-2543.1730S ribosomal protein S9P OS=Pyrococcus horikoshii... [more]
RS9_PYRAB3.444e-2543.8830S ribosomal protein S9P OS=Pyrococcus abyssi GN=... [more]
RS9_PYRFU5.874e-2542.4530S ribosomal protein S9P OS=Pyrococcus furiosus G... [more]
RS9_THEVO1.890e-2346.6230S ribosomal protein S9P OS=Thermoplasma volcaniu... [more]
RS9_HALSA5.498e-2345.8630S ribosomal protein S9P OS=Halobacterium salinar... [more]
RS9_THEAC1.225e-2245.1130S ribosomal protein S9P OS=Thermoplasma acidophi... [more]
RS9_HALMA1.600e-2242.8630S ribosomal protein S9P OS=Haloarcula marismortu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ch08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290676 ID=CB290676; Name=CB290676; organism=Citrus sinensis; type=EST; length=692bp
TTTTTTTTTTTTTTTTTCGTATAAACAGAAATCACTTCTTCATTCAAAAG
CAAATATAAAATCCATATGATAATCTGAAAACCACAATACCCTTAACAAT
AACAATAACCATTCAAAATCTATGTGGCCTCAAAAACATATTAATTAATC
CTTCAATAAAACCCAAAATTAATAACAATAATAAAAACGCAACATAAACC
TCTGTTTCTTCAACGGTAAAATTTCTGGAACCTAGCCCTGGCGCCGCGTC
CTCCGAACTTCTTAGGCTCACAGCGTCTAGGATCAGCCACAAGCAAAGTC
CTATCGTACCTAACCAAAATGTCTTTTATCTCCTTCTTGCTCTGTTCGTC
CACGTACTTCTGATAAAACGCGACCAAGGCCTTGGCGATGCTCTGGCGTA
TAGCGTAGATCTGAGATGTGTGGCCTCCGCCCTTGACGCGGATCCTCATG
TCTACTCCGTTGAAACGGTGTCGTCCGAGCAATAGGATCGGCTCGAAGGC
CTTGAAACGCAGGATCTCTGGCTCCACAAGCTCGATTGGGCAGCCGTTGA
TCTTGATCAAGCCGCGGCCGCGCTTGCAGTAGGTTACTGCCACCGCCGTC
TTCTTGCGGCCGAAGCATTGCACGGACTCGGTTTTAGGAGCAGCAGTAGC
CATGTTGGGATCAGTGCTTAGTGTGTGTTTGTGTTGTGTGAG
back to top