CB290677

Overview
NameCB290677
Unique NameCB290677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.101e-13
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 RVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 213
            ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    5 KIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.101e-13
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 RVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 213
            ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    5 KIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.101e-13
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 RVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 213
            ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    5 KIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.101e-13
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    4 RVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCN 213
            ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    5 KIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.050e-13
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    4 RVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY 201
            ++ +++I N+ NRQ TF KR+NGL+KKA ELS+LCD E+A+I+FS+  KL+++ SS  M K L RY
Sbjct:    7 KITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQY-SSRDMDKLLIRY 71          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.178e-12
Identity = 38/85 (44.71%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    4 RVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 258
            ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    5 KIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 37/85 (43.53%), Postives = 61/85 (71.76%), Query Frame = 1
Query:    4 RVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALE 258
            ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    5 KIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86          
The following BLAST results are available for this feature:
BLAST of CB290677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2A_XENLA3.101e-1352.86Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB3.101e-1352.86Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE3.101e-1352.86Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK3.101e-1352.86Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
SRFC_DICDI4.050e-1353.03Serum factor response C OS=Dictyostelium discoideu... [more]
MEF2B_HUMAN1.178e-1244.71Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE4.477e-1243.53Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ch08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290677 ID=CB290677; Name=CB290677; organism=Citrus sinensis; type=EST; length=821bp
GGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGAC
CTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCG
TTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAG
CTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGGTA
CCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGG
CCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGCACGATAT
GAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCC
TCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCAT
TGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACCCTTACT
GAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGACCCTCAA
ACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCCTA
GTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCGAT
ACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATACCA
GCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAATT
ACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCAGTCA
ATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCTTTGTAA
GCAACCCTATTCAGTGACTAG
back to top