CB290677

Overview
NameCB290677
Unique NameCB290677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.065e-33
Identity = 84/176 (47.73%), Postives = 112/176 (63.64%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 516
            G++E+KRIEN  NRQVTF+KRR GLLKKA+ELSVLCDAE+ LIIFS+ GKL+E+ S SSSM K +ERYQK         VS     E  +Q    E  ++K   E LQ + R ++GE+L  L   EL  L +QL+ +  ++RS + Q ML  L  L+ KE++L + N  L + L E
Sbjct:    4 GKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQK---------VSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAE 170          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.697e-33
Identity = 80/167 (47.90%), Postives = 110/167 (65.87%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLK 501
            GR ELKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL  IR  +T+ +   + +L+ KE+ L + N+ L+
Sbjct:    4 GRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLR 168          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.601e-33
Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 507
            G+ E+KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVAL+IFS R KLYEF SSSS+  T+ERYQ+        N   R      ++ E   L  + E L+ S+R LLGE +   + +EL+ LE QLD SL +IR+ + Q + + + +L+ +E+ L + NK LK++
Sbjct:    4 GKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEF-SSSSIAATIERYQR--RIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK 169          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.284e-32
Identity = 87/233 (37.34%), Postives = 136/233 (58.37%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQR-SQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQ-VNTLQLNPSAEDCGYGLKPAQPQGDTFF-----------HALECEP-TLQIGYQPA 657
            G++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T+ERY+K N         A E      QQE  KL+ +  +LQ  + R ++G+ +  ++ ++L+ +E +L+  + +IR+ + + +   +  +Q +E  L   N  L+ +++E  +    L +  +A    Y      P     F           +A + +P TLQ+G QPA
Sbjct:    4 GKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKSTVERYKKANSDTSNSGTVA-EVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQPLNMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHYAHQLQPTTLQLGQQPA 234          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.895e-32
Identity = 82/172 (47.67%), Postives = 119/172 (69.19%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ---KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 507
            G+ ++KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF S+S+  KT+ERY+   K N G    N + ++ +E   + +   L  + EAL+  +R LLGE+L   + +EL SLE +L+ SL  IR  +T+ + + + +L+ KE  L + N+ L+++
Sbjct:    4 GKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQ-KTIERYRTYTKENIG----NKTVQQDIE-QVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREK 169          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.933e-31
Identity = 74/171 (43.27%), Postives = 112/171 (65.50%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 510
            G++ ++RI+N  +RQVTF+KRRNG+ KKA EL++LCDAEV L+IFS+ G+LYE+ SS+SM   ++RY K      E    A    EL   Q+E   L+ +   LQ + R L+GE+L  LN KEL+SLE QL++SL+ +R+ +   ++D + EL  K  L+ + N  L +++
Sbjct:    4 GKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEY-SSTSMKSVIDRYGK---SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLEISLRSVRTKKDHVLIDEIHELNRKGSLVHQENMELYKKI 170          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.933e-31
Identity = 92/244 (37.70%), Postives = 136/244 (55.74%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMLKTLERYQKCNYGAPEPNVSAR-EALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTA---GPSLNNYMQGWL 717
            G+V+++RIEN+++RQVTF+KRR GLLKKA+E++VLCD +VA I+FS +G L+ + SS ++M + LE+Y +    +   NV      LE S   +++KL+ R EAL++SQRNL+G+EL  L  ++++ LE Q+D SL  IRS               KE+LL E N  L++++ E   + TL     A        PA    D F       P L I    +     VTA     S NN +  W+
Sbjct:    4 GKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHELLSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRS--------------RKEKLLMEKNTILEKKITE---LETLHTCIRASPTKAAAPPACNTADAFV------PNLNICCGDSGEPETVTAPLGWTSSNNGLPWWM 224          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 7.346e-31
Identity = 80/206 (38.83%), Postives = 127/206 (61.65%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ-KCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQ--GDTFF 609
            G+V+++RIEN ++RQVTF KRR GLLKKA ELSVLCDA+V +IIFS++GKL+E  ++ +M   +ERYQ     G  EP    R+ +   ++Q    L+   + LQR  R+  G   G +   +L +LE+ L++ + QIR+T+ Q M   +  L++KE +L EAN+ L++++ E  ++    L+  ++      +P QP   G+ FF
Sbjct:    4 GKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAGGQMEPGALQRQQV---AEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKEQQKLYMSLLDLHSQ------QPTQPMTYGNRFF 200          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30
Identity = 74/178 (41.57%), Postives = 109/178 (61.24%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC---NYGAPEPNVSAREALE---LSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 516
            G+++LKRIEN ++RQVTF KRR GLLKKA ELSVLCDAE+ ++IFS +GKL+E  +  +M   +++Y KC     G+     +A+E L+   L  + E   LK   E LQ+    + G   G +N +EL  LE+ L+  + QIRS +   ML  +  L++KE +L   NK L +++ E
Sbjct:    4 GKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEE 181          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.219e-30
Identity = 74/178 (41.57%), Postives = 111/178 (62.36%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS-QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 531
            G++ ++RI++  +RQVTF+KRR GL+KKA EL++LCDAEV LIIFS+ GKLY+F +SSSM   ++RY K      E       A E+   Q+E   L+    ALQ + R ++GE+L  L+  EL SLE Q+++SL+ IR  + Q +   + EL  K  L+ + N  L +++   +Q N
Sbjct:    4 GKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDF-ASSSMKSVIDRYNKSKI---EQQQLLNPASEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQKRNLIHQENLDLSRKVQRIHQEN 177          
The following BLAST results are available for this feature:
BLAST of CB290677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
GGM13_GNEGN2.065e-3347.73MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
MAD56_ORYSI2.697e-3347.90MADS-box transcription factor 56 OS=Oryza sativa s... [more]
AGL19_ARATH4.601e-3349.11Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
MADS3_ORYSJ2.284e-3237.34MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MAD50_ORYSJ3.895e-3247.67MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD27_ORYSJ1.933e-3143.27MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD20_ORYSJ1.933e-3137.70MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD33_ORYSJ7.346e-3138.83MADS-box transcription factor 33 OS=Oryza sativa s... [more]
AGL12_ARATH2.137e-3041.57Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
AGL21_ARATH6.219e-3041.57Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290677 ID=CB290677; Name=CB290677; organism=Citrus sinensis; type=EST; length=821bp
GGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGAC
CTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCG
TTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAG
CTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGGTA
CCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGG
CCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGCACGATAT
GAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCC
TCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCAT
TGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACCCTTACT
GAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGACCCTCAA
ACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCCTA
GTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCGAT
ACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATACCA
GCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAATT
ACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCAGTCA
ATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCTTTGTAA
GCAACCCTATTCAGTGACTAG
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