CB290677

Overview
NameCB290677
Unique NameCB290677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.989e-24
Identity = 70/207 (33.82%), Postives = 116/207 (56.04%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSML-KTLERYQKCN----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL-----KQRLMEGYQVNTLQLNPSAEDCGYGLKPAQP 591
            G++E+KRIEN  NR VTF+KRRNGL+KKA E++VLCDA+VALIIF++ GK+ ++C  S  L   L++YQK +    + A   N+S           E  ++K   ++LQ   R+L GE++  LN K L ++E  ++  L ++R     + ++ L   +  E++++E  + L     +Q +        + +       GY ++P QP
Sbjct:    4 GKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLS----------NEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVR----DHQMEILISKRRNEKMMAEEQRQLTFQLQQQEMAIASNARGMMMRDHDGQFGYRVQPIQP 196          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.989e-24
Identity = 69/172 (40.12%), Postives = 103/172 (59.88%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 516
            G++E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF SS+S++  L++Y K             +A   +   E  K+K   + +Q   R+L GE++  LN +EL  LE  LD  L  IR+ +     D L  ++ K Q + E    L  +L +
Sbjct:    4 GKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHKLT------GRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQN----DLLRMMRKKTQSMEEEQDQLNWQLRQ 164          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.989e-24
Identity = 67/171 (39.18%), Postives = 105/171 (61.40%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 504
            G++E+KRIEN  NRQVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF SS+S++  L++Y K         ++ R  L+   +    E  K+K   + +Q   R+L GE++  LN +EL  LE  L+  L  IR+ + + +     + Q  E+   + N  L+Q
Sbjct:    4 GKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHK---------LTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQDQLNCQLRQ 164          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.989e-24
Identity = 67/170 (39.41%), Postives = 104/170 (61.18%), Query Frame = 1
Query:    4 RVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ-QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 510
            +VE+KRIENK +RQVTF+KRRNGL++KA +LS+LC++ +A+++ S  GKLY+  S  +M K ++RY+         +    EAL+L+ + + YL LK   E L+  Q  L    +   +   L SLE QL+ +L   R+ +T+ M+  +  LQ  E LL E N+TL  ++
Sbjct:    5 KVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE-------IHHADELEALDLAEKTRNYLPLK---ELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLREENQTLASQV 164          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.099e-24
Identity = 75/209 (35.89%), Postives = 111/209 (53.11%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS-MLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALEC 624
            G++E+K+IEN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+FS  GKL EFCS  + M + ++RY   N G   P+    +  +L  + E L+ +     L+   R   G +L  +   EL+ LERQL+ S+ ++R  + + M   L  L  K ++L E N  + + L E       Q        G   KP + Q   F   L+C
Sbjct:    4 GKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTN-GLRLPD-HHDDQEQLHHEMELLRRETC--NLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQ------QAGIDTKPGEYQ--QFIEQLQC 200          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.531e-23
Identity = 66/167 (39.52%), Postives = 100/167 (59.88%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 498
            G++++KRIEN+ NRQVT++KRRNGL KKA EL+VLCDA+V++I+ S+ GKL+EF S S   K L + YQK         V    +     Q++  KLK     L++  R  +GE L  LN ++LE L   +D SLK IR  + + + + +   + K + + E ++ L
Sbjct:    4 GKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQK------TVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNL 164          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.317e-23
Identity = 61/176 (34.66%), Postives = 110/176 (62.50%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLME 516
            G++E+KRIEN  NRQVT++KRRNG++KKA E+SVLCDA V++IIF++ GK++EFCS S++++  L+ Y K         +S +   +   +    E  ++K   +++Q   R+L GE++  LN KEL  LE  L+     +++ + ++    +  ++   +++ E N++L+ +L +
Sbjct:    4 GKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHK---------LSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEF----VRMMRKHNEMVEEENQSLQFKLRQ 166          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.256e-22
Identity = 59/182 (32.42%), Postives = 104/182 (57.14%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNS-KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL 543
            G++E+KRIE+   RQVTF+KRR G LKKA EL+VLCDA+V +++FS++GKL++FCS   +L  +E + +         +      +     E  +L+   + L+ S R   GE+L  +++  EL  L+ QL+ SL ++ + + + M   L +++   Q + E N  L + + +   +N + +
Sbjct:    4 GKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVIL--MELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMVTKILLLNVITI 183          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.640e-22
Identity = 60/156 (38.46%), Postives = 95/156 (60.90%), Query Frame = 1
Query:    1 GRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 465
            GRVELK+IEN  NRQVTF+KRR GLLKKA EL++LCDA++ +I+FS  GK+YE+ S    +  + +RY K    AP       + ++    QE  ++K     L+   R  +G++L  L  +++ +LE+Q++ SL ++R  + Q +   L E+  +
Sbjct:    4 GRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLK----APSTRFEEMD-VQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMHSR 154          
BLAST of CB290677 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.233e-22
Identity = 68/190 (35.79%), Postives = 111/190 (58.42%), Query Frame = 1
Query:    4 RVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY--QKCNYGA--PEPNV--------------SAREALELSSQQEYLKLKARYEALQRSQ---RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRL 510
            R E++RIE+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FS+ GKL +F +SS+M + +++Y     N G    +P++              ++   + L  Q E+ K  +  E L  +    R + GEEL  L+ +EL+ +E+ L+  L+++  T+ Q  +  ++ELQ K   L+E N  L+ ++
Sbjct:    5 RREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQF-ASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQM 193          
The following BLAST results are available for this feature:
BLAST of CB290677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
PIST_ARATH2.989e-2433.82Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
GLOB_TOBAC2.989e-2440.12Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
FBP1_PETHY2.989e-2439.18Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
AGL31_ARATH2.989e-2439.41Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
TT16_ARATH5.099e-2435.89Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MADS1_PETHY2.531e-2339.52Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
GLOB_ANTMA4.317e-2334.66Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MAD30_ORYSJ1.256e-2232.42MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD31_ORYSJ1.640e-2238.46MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MAD55_ORYSJ6.233e-2235.79MADS-box transcription factor 55 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290677 ID=CB290677; Name=CB290677; organism=Citrus sinensis; type=EST; length=821bp
GGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCAAGTGAC
CTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGCTTTCCG
TTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGAGGAAAG
CTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGAGAGGTA
CCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAAGGGAGG
CCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGCACGATAT
GAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACTTGGCCC
TCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATATGTCAT
TGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACCCTTACT
GAACTGCAACATAAGGAACAGTTGCTGAGCGAAGCAAATAAGACCCTCAA
ACAAAGGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAATCCTA
GTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGGGCGAT
ACCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGATACCA
GCCTGCGGACCCAATATCGGTTGTCACAGCAGGCCCGAGTCTGAATAATT
ACATGCAAGGATGGCTACCATGCTAAGAGAGCGGCGGGCATTACCAGTCA
ATGTATTGCAGTTGATCCATAAGAATCAGCAACTTTGTATCCCTTTGTAA
GCAACCCTATTCAGTGACTAG
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