CB290678

Overview
NameCB290678
Unique NameCB290678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPID_HUMAN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Homo sapiens GN=PPID PE=1 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 2.352e-50
Identity = 100/174 (57.47%), Postives = 121/174 (69.54%), Query Frame = -3
Query:  262 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 780
            S   NP+VFFD+ +GG+  GRIV+ELFAD+ P+TAENFRALCTGEKGIG + GKPLH+KG  FHR+I  FM Q           GESI+G KF DENF  KH   G+LSM NAG  TNGSQFF+ T  T  LDGKHVVFGQV++G+ V + +E V     +  K  VIA+CG+L
Sbjct:   11 SNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGRNTNGSQFFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGEL 184          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.239e-50
Identity = 99/163 (60.74%), Postives = 112/163 (68.71%), Query Frame = -3
Query:  268 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 756
            FFD+   GQP GRIV +LF DV P+TA NFRALCTGEKG G       Y GS+FHRVIP FM Q           G+SI+G KF DENF  KH  PG+LSM NAGP TNGSQFF+ T  T WLDGKHVVFG+V EGMDVVK +E +GS+SG T   +VI  CG
Sbjct:    5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYG-------YAGSTFHRVIPQFMLQGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCG 160          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.936e-50
Identity = 105/178 (58.99%), Postives = 125/178 (70.22%), Query Frame = -3
Query:  262 QSKMPNPKVFFDMTVG---GQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 783
            QSK+ + KV+FD++VG   G+ AGRIV+ L+ D  P+T ENFRALCTGEKG G       YKGS+FHRVI  FM Q           G+S++G  F DENF   H GPG+LSM NAGP TNGSQFF+CT KT WLDG+HVVFGQV+EGM+VVK IE+  +  G R  K VVIADCGQL
Sbjct:   85 QSKITH-KVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFG-------YKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVIADCGQL 254          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.524e-49
Identity = 98/176 (55.68%), Postives = 120/176 (68.18%), Query Frame = -3
Query:  262 INQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 789
            I +++  NP+VFFD+ +GG  AGRIVM L ADV P+TAENFR LCT E+G G       YKG SFHRVIP FMCQ           G+SI+G KF DENF  KH   G LSM N+G  TNGSQFF+CT KT+WLD KHVVFG V+ G +VV+ +E+ GS SG  ++ +VI  CG+L
Sbjct:  131 IEKAEKRNPQVFFDIRIGGNDAGRIVMLLRADVVPKTAENFRQLCTHEQGYG-------YKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGEL 299          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.524e-49
Identity = 98/173 (56.65%), Postives = 118/173 (68.21%), Query Frame = -3
Query:  259 PKVFFDMTVGGQPAGRIVMEL----FADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 765
            P+V+FD+ +G Q AGRI +EL    F DV P+TAENFRALCTGEKG+GK  KPL YKGS FHRVI  FM Q           GESI+G KF DENF  KH  P +LSM N+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  +V+ IE + + + +    V I DCG+LS
Sbjct:    8 PRVYFDIQIGSQKAGRIALELVRLPFNDVVPKTAENFRALCTGEKGVGKQRKPLSYKGSIFHRVIKQFMIQGGDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: CYPC_YEAST (Peptidyl-prolyl cis-trans isomerase C, mitochondrial OS=Saccharomyces cerevisiae GN=CPR3 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 99/175 (56.57%), Postives = 117/175 (66.86%), Query Frame = -3
Query:  262 NQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 786
            N +     KVFFD  V G   GRI  EL+ +V P+TAENFRALCTGEKG G       YKG  FHR+IP FM Q           G+SI+GSKFADENFVKKH   G+LSM NAGP TNGSQFF+ T    WLDGKHVVFG+V +GMD+VKAIE  G++SG+    +VI + G+L
Sbjct:   15 NSASRLGKKVFFDPAVNGTKIGRIEFELYDNVVPKTAENFRALCTGEKGWG-------YKGVPFHRIIPDFMIQGGDTDLTNGFGGKSIYGSKFADENFVKKHDKAGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVTKGMDIVKAIESYGTASGKPRAEIVIEEAGEL 182          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.880e-49
Identity = 94/169 (55.62%), Postives = 118/169 (69.82%), Query Frame = -3
Query:  259 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQLS 765
            P+VFFD+ +G +  GRI +EL   + P+TAENFRALCTGEKG+GK GKPLH+KGS FHRVI  FM Q           GESI+G KF DENF  KH  P +LSM N+GPGTNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ +E + + + +  K V I +CG+L+
Sbjct:    8 PRVFFDIQIGNEKTGRIALELV--LVPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADKPVKDVTIVECGELT 174          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIH_NEUCR (Peptidyl-prolyl cis-trans isomerase H OS=Neurospora crassa GN=cyp-3 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.290e-48
Identity = 99/173 (57.23%), Postives = 117/173 (67.63%), Query Frame = -3
Query:  262 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSK-FADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 768
            NP VFFD+T+GG+P GRI  ELF DV PRTAENFR  CTGE      G+P  YKGS FHR+IP FMCQ              I+G+K FADENF+ KH  PG+LSM NAGP TNGSQFF+ T  T +LDGKHVVFG+VV+GMDVVK +E   +     + P   VVIA CG++
Sbjct:   11 NPLVFFDITLGGEPLGRITFELFKDVVPRTAENFRQFCTGESK-NNLGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIYGTKSFADENFLLKHDTPGLLSMANAGPNTNGSQFFITTVPTPFLDGKHVVFGKVVDGMDVVKKMENTKTGYRGKDVPNLDVVIAQCGEM 182          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.290e-48
Identity = 101/168 (60.12%), Postives = 115/168 (68.45%), Query Frame = -3
Query:  262 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSS-SGRTNKPVVIADCGQL 762
            KVFF +  G  P GR+V EL+ D+ P+TAENFRALCTGEKGIGKSGKPLHYKGSSFHRVI  FM Q           GESI+G  F DENF+ KH   G LSM NAG  TNGSQFF+ TA+T  L+G H VFG+VVEG D+VK +E   +  S R     VI DCGQL
Sbjct:    8 KVFFQIKQGNTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHK-IGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKAACVIEDCGQL 174          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 1.290e-48
Identity = 94/167 (56.29%), Postives = 114/167 (68.26%), Query Frame = -3
Query:  262 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 762
            +V+FD+   GQP GR+V +L+ D+ P+TAENFRALCTGEKG G       Y GS FHRVIP FM Q           G+SI+G KF DENF K H  PG+LSM NAGP TNGSQFF+ T    WLDGKHVVFG+VV+G D+VK +E +GS SG T   +V+A  G+L
Sbjct:    3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
The following BLAST results are available for this feature:
BLAST of CB290678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
PPID_HUMAN2.352e-5057.4740 kDa peptidyl-prolyl cis-trans isomerase OS=Homo... [more]
CYPH_SCHPO5.239e-5060.74Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
CP20B_ARATH8.936e-5058.99Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIE_DROME1.524e-4955.68Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPID_ASPFU1.524e-4956.65Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
CYPC_YEAST4.435e-4956.57Peptidyl-prolyl cis-trans isomerase C, mitochondri... [more]
PPID_ASPOR9.880e-4955.62Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIH_NEUCR1.290e-4857.23Peptidyl-prolyl cis-trans isomerase H OS=Neurospor... [more]
PPID_DICDI1.290e-4860.12Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
CYPH_YEAST1.290e-4856.29Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ch09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290678 ID=CB290678; Name=CB290678; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTAATATAACAAGACAAGCCCCCTTTTATTTAAAA
AGGGAGCTCATAGAAAGACATAAAAAACCCTTCATCAAGAACCACCACCG
GAGACCCGATCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAG
ATTAAAAGTCCTACAGACACGGCCACATAATAATAGATAGCGTAATCGCC
ATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGAT
CAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGT
CCTTCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTC
CTTCGACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTC
TTGGCCGTACAGACGAAAAACTGAGATCCGTTGGTTCCGGGTCCGGCATT
CCCCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCAT
CGGCGAATTTTGAGCCGAAGATTGATTCGCCTCCGGTTCCGTTTCCGGGG
GTGAAGTCTCCCCCCTGGCACATGAATCCGGGGATCACACGGTGGAAGGA
CGAGCCCTTGTAGTGGAGTGGCTTGCCGGACTTGCCGATGCCTTTCTCGC
CGGTGCAAAGGGCGCGGAAGTTCTCGGCGGTTCGGGGGGTGACATCGGCG
AAGAGCTCCATCACGATCCTGCCGGCGGGCTGACCGCCGACGGTCATGTC
GAAGAACACTTTGGGGTTTGGCATTTTTGATTGGTTGATTGGAGAGAAAA
AAACAA
back to top