CB290678

Overview
NameCB290678
Unique NameCB290678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIH_ASPOR (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 92/176 (52.27%), Postives = 116/176 (65.91%), Query Frame = -3
Query:  262 NQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGS-KFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 786
            + +K PNP VFFD+T+GG+  GRI MELF  +TPRTAENFR  CTGE      G+P  YK S FHRVI  FM Q             +I+G+ +F DENF+ KH  PG+LSM N+GP TNG QFF+ T  T +L+ KHVVFGQVVEGMDVV+ IE   ++  + N+ V I  CG++
Sbjct:    7 SSAKTPNPVVFFDITLGGESLGRIKMELFTSITPRTAENFRQFCTGESK-SPQGRPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSRTIYGTPRFQDENFILKHDQPGLLSMANSGPNTNGCQFFITTTATPFLNNKHVVFGQVVEGMDVVRMIENTRTTRDKPNQDVTIIQCGEM 181          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIB_ORPSP (Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyces sp. (strain PC-2) GN=CYPB PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.589e-46
Identity = 96/168 (57.14%), Postives = 114/168 (67.86%), Query Frame = -3
Query:  262 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 762
            KV+FD+  G +  GRIV+ L+ +V P+T ENFRAL TGEKG G       YK S FHRVI  FM Q           G+SI+G +FADENF  +HTGPGILSM NAG  TNGSQFF+ T  T WLDG+HVVFG+V+EGMDVV AIE   +  G R   PV+IADCG+L
Sbjct:   31 KVYFDIKQGDKDLGRIVLGLYGEVVPKTVENFRALATGEKGYG-------YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFADENFKLRHTGPGILSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVIEGMDVVTAIETTKTLPGDRPATPVIIADCGEL 191          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 99/180 (55.00%), Postives = 116/180 (64.44%), Query Frame = -3
Query:  262 SKMP---NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSK-FADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIE--KVG-SSSGRTNKPVVIADCGQL 780
            +K+P   NP VFFD+T+GG+P GRI  ELF DV P+TAENFR  CTGE      G+P  YKGS FHR+IP FMCQ              I+G K F DENF  KH  PG+LSM NAGP TNGSQFF+ T  T +LD KHVVFG+V EGMDVVK +E  K G       N  VVI+ CG++
Sbjct:    4 TKLPESGNPLVFFDITIGGEPLGRITFELFKDVVPKTAENFRQFCTGESKT-PVGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKMEATKTGYRGKDMPNLDVVISQCGEM 182          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIH_ASPFU (Peptidyl-prolyl cis-trans isomerase H OS=Aspergillus fumigatus GN=cyp3 PE=3 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 94/170 (55.29%), Postives = 114/170 (67.06%), Query Frame = -3
Query:  262 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGS-KFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 768
            NP VFFD+ +GG P GRI MELFADVTPRTAENFR  CTGE      GKP  YK S FHRVI  FM Q             +I+G+ KFADENFV KH   G+LSM N+GP TNG QFF+ T  T +L+GKHVVFGQVV+GMD+V+ IE   +   + ++ V+I  CG++
Sbjct:   13 NPIVFFDIALGGVPLGRIKMELFADVTPRTAENFRRFCTGESK-NSQGKPQGYKNSKFHRVIKDFMIQGGDFVNGDGTGSCTIYGTPKFADENFVLKHDRAGVLSMANSGPNTNGCQFFITTTATPFLNGKHVVFGQVVDGMDIVRMIENTRTIRDKPSQDVIITQCGEM 181          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.828e-46
Identity = 92/179 (51.40%), Postives = 120/179 (67.04%), Query Frame = -3
Query:  262 INQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK---PVVIADCGQL 789
            +  S   NP VFFD+++GGQ  GR+ +ELFADV P+TAENFR  CTGE    K G P+ YKGS+FHRVI  FM Q             SI+   FADENF  +H+ PG+LSM N+GP TNG QFF+  +K +WLDGKHVVFG++++G+ V++ IE V   +G  NK   PVVI+ CG++
Sbjct:    3 VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.828e-46
Identity = 92/179 (51.40%), Postives = 120/179 (67.04%), Query Frame = -3
Query:  262 INQSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK---PVVIADCGQL 789
            +  S   NP VFFD+++GGQ  GR+ +ELFADV P+TAENFR  CTGE    K G P+ YKGS+FHRVI  FM Q             SI+   FADENF  +H+ PG+LSM N+GP TNG QFF+  +K +WLDGKHVVFG++++G+ V++ IE V   +G  NK   PVVI+ CG++
Sbjct:    3 VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENV--PTGPNNKPKLPVVISQCGEM 177          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.335e-45
Identity = 95/168 (56.55%), Postives = 116/168 (69.05%), Query Frame = -3
Query:  262 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCGQL 762
            KV+FD+  GG+P GRIVM L+    P+TAENFRAL TG+   G+      Y+GSSFHR+I  FM Q           G+SI+GSKF DENF  KHTGPG+LSM NAG  TNGSQFF+CT KT WLD +HVVFG V+EGMDVV A+E V +S G +  +P+ IA  G+L
Sbjct:   46 KVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGED-LGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITIAASGEL 212          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: CYP11_CAEEL (Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorhabditis elegans GN=cyn-11 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.885e-45
Identity = 95/170 (55.88%), Postives = 112/170 (65.88%), Query Frame = -3
Query:  262 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCGQL 768
            NP VF ++T GG P G IV+ELFADVTPRTAENFR  CTGE    K G P  YK  +FHRVI  FM Q             SI+GSKF DENF  KH GPG+LSM NAG  TNG QFF+  AKT++LD KHVVFG+V++GM  V+ IE V + +    K P+V+  CGQL
Sbjct:   16 NPIVFLEVTAGGAPIGTIVIELFADVTPRTAENFRQFCTGE--YKKDGVPNGYKNCTFHRVIKDFMIQGGDFCNGDGTGLMSIYGSKFRDENFELKHIGPGMLSMANAGSDTNGCQFFITCAKTDFLDNKHVVFGRVLDGMLTVRKIENVPTGANNKPKLPIVVVQCGQL 183          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.130e-44
Identity = 93/171 (54.39%), Postives = 118/171 (69.01%), Query Frame = -3
Query:  262 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKP---VVIADCGQL 765
            P VFFD+++G  PAGRI MELF D+TP+TAENFR LCTGE  I  +  P  YK ++FHRVIP FM Q             SI+G++F DENF  KHTGPG+LSM N+GP TNG QFF+ TA  E+LDGKH VFG+V++G+  V+ IE V   +G  N+P   V IA+CG++
Sbjct:   13 PIVFFDISIGDTPAGRIKMELFDDITPKTAENFRQLCTGEHRI--NSVPQGYKKATFHRVIPQFMVQGGDFVRGDGTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGLLTVRKIENV--PTGANNRPKLQVRIAECGEM 179          
BLAST of CB290678 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.130e-44
Identity = 92/169 (54.44%), Postives = 116/169 (68.64%), Query Frame = -3
Query:  262 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGI--GKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXGESIFGSKFADENFVKKHTGPGILSMGNAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 762
            K +FD+++GG+PAGR+V E+++DVTP+TAENF  LC G+ G    K G PL Y+GS FHRVI GFMCQ           GESI+G KF DENF +KH  P +LSM NAGP TNGSQ F+  A T  LDGKHVVFG+V++G  VV+AIE+  +++ R    V I  CG L
Sbjct:    6 KTYFDLSIGGKPAGRVVFEVYSDVTPKTAENFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFTNGDGTGGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQETAADRPLADVRIDACGIL 174          
The following BLAST results are available for this feature:
BLAST of CB290678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 228
Match NameE-valueIdentityDescription
PPIH_ASPOR2.060e-4652.27Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIB_ORPSP4.589e-4657.14Peptidyl-prolyl cis-trans isomerase B OS=Orpinomyc... [more]
PPIH_GIBZE5.994e-4655.00Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
PPIH_ASPFU5.994e-4655.29Peptidyl-prolyl cis-trans isomerase H OS=Aspergill... [more]
PPIH_HUMAN7.828e-4651.40Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN7.828e-4651.40Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
PPIB_CRYNE1.335e-4556.55Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
CYP11_CAEEL3.885e-4555.88Peptidyl-prolyl cis-trans isomerase 11 OS=Caenorha... [more]
PPIH_CRYNE1.130e-4454.39Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
PPID_ASHGO1.130e-4454.44Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ch09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290678 ID=CB290678; Name=CB290678; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTAATATAACAAGACAAGCCCCCTTTTATTTAAAA
AGGGAGCTCATAGAAAGACATAAAAAACCCTTCATCAAGAACCACCACCG
GAGACCCGATCCAACCCGAACAAGTAACATAGCAGGAAAATTAGATAAAG
ATTAAAAGTCCTACAGACACGGCCACATAATAATAGATAGCGTAATCGCC
ATCACGATCGCGATCAGACGGCTCGTGATGATGGCGATCATTATCATGAT
CAAATCTAAGACAATTGACCGCAATCAGCGATCACGACGGGCTTGTTGGT
CCTTCCGGAGCTGGACCCCACTTTCTCGATGGCCTTGACGACGTCCATTC
CTTCGACGACTTGACCGAACACAACGTGCTTCCCATCGAGCCACTCGGTC
TTGGCCGTACAGACGAAAAACTGAGATCCGTTGGTTCCGGGTCCGGCATT
CCCCATGGAGAGGATTCCGGGGCCGGTGTGCTTCTTCACGAAGTTCTCAT
CGGCGAATTTTGAGCCGAAGATTGATTCGCCTCCGGTTCCGTTTCCGGGG
GTGAAGTCTCCCCCCTGGCACATGAATCCGGGGATCACACGGTGGAAGGA
CGAGCCCTTGTAGTGGAGTGGCTTGCCGGACTTGCCGATGCCTTTCTCGC
CGGTGCAAAGGGCGCGGAAGTTCTCGGCGGTTCGGGGGGTGACATCGGCG
AAGAGCTCCATCACGATCCTGCCGGCGGGCTGACCGCCGACGGTCATGTC
GAAGAACACTTTGGGGTTTGGCATTTTTGATTGGTTGATTGGAGAGAAAA
AAACAA
back to top