CB290681

Overview
NameCB290681
Unique NameCB290681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290681 vs. ExPASy Swiss-Prot
Match: ISY1_YARLI (Pre-mRNA-splicing factor ISY1 OS=Yarrowia lipolytica GN=ISY1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.420e-25
Identity = 71/194 (36.60%), Postives = 100/194 (51.55%), Query Frame = 1
Query:   85 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXY---LASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELF--EKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREMR 651
            M+RN EK  SML+R+   QA                 S    L +A+KWR Q+M+EI RKV +IQ+  L + +LRDLNDEINKL+ E+  W+ +I  LGGPNY                     G+  GY+Y+G A++LPGV E+   +K  + +K    Y   K ++  Y+GY DD    L   E   E E++
Sbjct:    1 MSRNSEKQGSMLHRFQQQQANAAGLLDVGRTVRPTYISGVESLPQAEKWRSQVMKEISRKVTKIQDPALSDFQLRDLNDEINKLMSERHRWDLQIRSLGGPNYASF-----------------GGKKRGYQYYGRARELPGVSEMLQSQKKDDTKKSGDFYIPPKNLNMVYFGYADDNVTGLMEFEKQRESELQ 177          
BLAST of CB290681 vs. ExPASy Swiss-Prot
Match: ISY1_DEBHA (Pre-mRNA-splicing factor ISY1 OS=Debaryomyces hansenii GN=ISY1 PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 71/203 (34.98%), Postives = 103/203 (50.74%), Query Frame = 1
Query:   85 MARNEEKAQSMLNRYIAL---QAXXXXXXXXXXXYLASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELF------------EKPPELRKRRTRYDIYKRIDASYYGYRDDEDGVLERVEGPAEREM 648
            M+RN EKAQS LNR+ AL   +A                   L +A+KWR  I+ EI  K+ +IQ+  L E+++RD+ND +NKL  EK  WE  I  LGG +Y  HF K  +  G +  + +      GYRYFG AK+LP V+E+             +   EL + R   +  +RI A YYG  D+ +   + +    ER++
Sbjct:    1 MSRNTEKAQSSLNRFQALKNKEAGVLESNPNFRPKYVQSVDSLPQAEKWRSTIIGEISVKLTKIQDPALNEYQIRDINDSLNKLFNEKRSWEYHIKNLGGADY-MHFNKDFNNAGKLSQLDSSGSHIKGYRYFGRAKELPDVKEVLMLQQKKGHANKSKHAKELEQNRLLNEQDQRIKADYYGVYDEINDGNDDIIASNERDI 202          
BLAST of CB290681 vs. ExPASy Swiss-Prot
Match: ISY1_SCHPO (Pre-mRNA-splicing factor isy1 OS=Schizosaccharomyces pombe GN=cwf12 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.621e-21
Identity = 62/167 (37.13%), Postives = 101/167 (60.48%), Query Frame = 1
Query:  214 DKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFELGGPNYTKHFAKMTDLEG-NIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPE-LRKRRTRYDIYK-RIDASYYGY-RDDEDGVLERVEGPAEREMRA-------KAVQEWRRL 681
            +K R  ++++I RK++ IQ+  L E+++RDLND IN+L+REK  WE +I +LGG NY  + AK+ + EG  I D+ +       YRY+G A++LPGV+ELFE     + +R+ + ++ K R+DA Y+GY    ++ +LE  E   E +          +  Q+W+ L
Sbjct:   30 EKHRASVVKDISRKISRIQSATLPEYQIRDLNDAINRLMREKHEWEVQIRDLGGINYLYNKAKLFEDEGEQISDIDD-------YRYYGRARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIPPAQESLLEDFEAKIEEQQHKHLENLGDEVEQDWKPL 189          
BLAST of CB290681 vs. ExPASy Swiss-Prot
Match: ISY1_CANAL (Pre-mRNA-splicing factor ISY1 OS=Candida albicans GN=ISY1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.828e-20
Identity = 68/195 (34.87%), Postives = 102/195 (52.31%), Query Frame = 1
Query:   85 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYL-ASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRIFE-LGGPNYTKHFAK-MTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELR--------------KRRTRYDIYK----RIDASYYGYRDDED 606
            M+RN+EKAQS LNR+   Q+                    LS+A+ WR+ I+ EI +++ EI +  + + ++R+LND++N+L  EK  WE  I + L G +Y +H      DL    + V N S +G  YRYFG AK LP V+ + E+  + R              KRR + D YK     ID +YYG+ D+E+
Sbjct:    1 MSRNKEKAQSSLNRFYQSQSSAPINYHYHQRPKNIHSITQLSQAEGWRRSIIGEISKQLTEINDFEISDIKVRELNDQLNELFNEKRRWEYHIRDKLHGNDYIRHNGNTKNDLINTGIRV-NNSDKGKYYRYFGRAKDLPEVKLMIEENKKNRKNHKRDDIDDSDQSKRRRKVDQYKSTDNSIDMNYYGFYDEEE 194          
BLAST of CB290681 vs. ExPASy Swiss-Prot
Match: ISY1_ASHGO (Pre-mRNA-splicing factor ISY1 OS=Ashbya gossypii GN=ISY1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.580e-16
Identity = 50/158 (31.65%), Postives = 83/158 (52.53%), Query Frame = 1
Query:   85 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXY----LASECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRI-FELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKRR 543
            M+RN +KA S+L RY  L A           +          +L EA +WR +++++IG KV +I +  L E ++ D+N+E+N+L +EK  WE  I   L GP+Y +    +    G +++         G RYFG A +LP V+EL ++  + R ++
Sbjct:    1 MSRNVDKANSVLARYQELVAENTSGYKDYSRFKRPTAVHRISNLEEAQRWRAEVVKDIGNKVTQIHDPSLNEMQIEDINNELNRLFQEKMRWESHIRRNLRGPDYRRMKQGLNTTGGTVIN---------GTRYFGRALELPHVQELLQQQQQQRVKQ 149          
BLAST of CB290681 vs. ExPASy Swiss-Prot
Match: ISY1_KLULA (Pre-mRNA-splicing factor ISY1 OS=Kluyveromyces lactis GN=ISY1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.982e-16
Identity = 53/157 (33.76%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   85 MARNEEKAQSMLNRYIALQAXXXXXXXXXXXYLA----SECRDLSEADKWRQQIMREIGRKVAEIQNEGLGEHRLRDLNDEINKLIREKGHWERRI-FELGGPNYTKHFAKMTDLEGNIVDVPNPSGRGPGYRYFGAAKKLPGVRELFEKPPELRKR 540
            M+RN  KA S+L RY  LQA                  ++   L EA +WR ++++EIG++V +I +  L E ++ ++NDE+NKL +EKG W+  I  +L GP+  K   ++    G ++D         G RYFG A +LP V++L  +  E R++
Sbjct:    1 MSRNVNKANSVLVRYQELQAAETGGYQDFSRLKRPTRINKVTKLDEALRWRNELVKEIGQRVTQIHDPSLNESQITEINDELNKLFQEKGRWDFHIRNKLKGPDLKKR-KQLNTTGGTLID---------GKRYFGRALELPEVQKLLRESKEQREK 147          
The following BLAST results are available for this feature:
BLAST of CB290681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ISY1_YARLI1.420e-2536.60Pre-mRNA-splicing factor ISY1 OS=Yarrowia lipolyti... [more]
ISY1_DEBHA4.570e-2434.98Pre-mRNA-splicing factor ISY1 OS=Debaryomyces hans... [more]
ISY1_SCHPO3.621e-2137.13Pre-mRNA-splicing factor isy1 OS=Schizosaccharomyc... [more]
ISY1_CANAL6.828e-2034.87Pre-mRNA-splicing factor ISY1 OS=Candida albicans ... [more]
ISY1_ASHGO4.580e-1631.65Pre-mRNA-splicing factor ISY1 OS=Ashbya gossypii G... [more]
ISY1_KLULA5.982e-1633.76Pre-mRNA-splicing factor ISY1 OS=Kluyveromyces lac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ch10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290681 ID=CB290681; Name=CB290681; organism=Citrus sinensis; type=EST; length=766bp
GCACTAGGCAAAATTAAAAATTAGGGTTTTGTTTTTTTGGGTTTATTCAG
TGAAACTCGCGAATCCAGAGTCAGGAACAGAGCCATGGCGCGTAACGAAG
AGAAAGCTCAGTCGATGCTGAATCGGTACATCGCACTACAGGCAGAAGAG
AAAAAGAAACCCAAAGAACGGCGTCCGTATTTAGCCTCTGAGTGCCGCGA
TCTCAGCGAGGCCGACAAGTGGCGGCAGCAAATCATGCGAGAAATCGGCC
GCAAAGTGGCCGAGATCCAGAACGAAGGCCTCGGCGAGCACCGGCTCCGC
GACCTCAACGACGAGATTAACAAACTAATCCGCGAGAAGGGGCACTGGGA
GAGACGGATTTTCGAACTCGGCGGCCCCAATTACACCAAACACTTTGCTA
AAATGACGGACTTGGAAGGGAACATCGTCGACGTCCCAAACCCTAGCGGG
CGTGGGCCGGGGTACCGTTATTTTGGCGCCGCGAAGAAGCTGCCGGGTGT
GAGGGAGTTGTTCGAGAAGCCGCCGGAGTTGCGAAAGCGGAGGACTAGGT
ATGATATTTATAAGAGGATTGATGCGAGTTATTATGGGTACAGGGATGAT
GAAGATGGGGTTTTGGAGAGAGTTGAGGGGCCCGCGGAGAGGGAAATGCG
TGCGAAGGCGGTGCAGGAGTGGAGGAGGTTGGATGAGATAAAGAAGGAGG
CGATGAAGACGGTGAAGAGCGGGGAAGAGGCGAGCGTGATGGGGCAGGTG
AACGAGATCTTGAAGG
back to top