CB290686 | Citrus Genome Database

Overview


Name	CB290686
Unique Name	CB290686
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	788

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CB290686_ssr679	microsatellite	CB290686_ssr679:679..690.	BLAST: Citrus ESTs to Prunus persica proteins V1
CB290686_ssr738	microsatellite	CB290686_ssr738:738..749.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239	contig	Csv1_Contig2239:50..837.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_PONAB (Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.772e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_ONCMY (Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1 SV=4)

HSP 1 Score: 157.918 bits (398), Expect = 5.772e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_MOUSE (Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.772e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_HUMAN (Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.772e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.772e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_BOVIN (Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.772e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AV_STRPU (Histone H2A.V (Fragment) OS=Strongylocentrotus purpuratus GN=H2A.F/Z PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.772e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS+RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K   +
Sbjct:   15 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGSQ 122

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AV_XENTR (Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.539e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AV_XENLA (Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.539e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125

[Close]

BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AV_PAGMA (Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 7.539e-38
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = -3

Query:  244 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 567
            VSRS RAGLQFPVGR+HR LK              VY+AAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K  ++
Sbjct:   18 VSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQ 125

The following BLAST results are available for this feature:

BLAST of CB290686 vs. ExPASy Swiss-Prot

BLAST of CB290686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241


Match Name	E-value	Identity	Description
H2AZ_PONAB	5.772e-38	76.85	Histone H2A.Z OS=Pongo abelii GN=H2AFZ PE=2 SV=3	[more]
H2AZ_ONCMY	5.772e-38	76.85	Histone H2A.Z OS=Oncorhynchus mykiss GN=h2afz PE=1...	[more]
H2AZ_MOUSE	5.772e-38	76.85	Histone H2A.Z OS=Mus musculus GN=H2afz PE=1 SV=2	[more]
H2AZ_HUMAN	5.772e-38	76.85	Histone H2A.Z OS=Homo sapiens GN=H2AFZ PE=1 SV=2	[more]
H2AZ_CHICK	5.772e-38	76.85	Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3	[more]
H2AZ_BOVIN	5.772e-38	76.85	Histone H2A.Z OS=Bos taurus GN=H2AFZ PE=1 SV=2	[more]
H2AV_STRPU	5.772e-38	76.85	Histone H2A.V (Fragment) OS=Strongylocentrotus pur...	[more]
H2AV_XENTR	7.539e-38	76.85	Histone H2A.V OS=Xenopus tropicalis GN=h2afv PE=2 ...	[more]
H2AV_XENLA	7.539e-38	76.85	Histone H2A.V OS=Xenopus laevis GN=h2afv PE=2 SV=3	[more]
H2AV_PAGMA	7.539e-38	76.85	Histone H2A.V OS=Pagrus major GN=h2afv PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS01_01da01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB290686 ID=CB290686; Name=CB290686; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTGAAACAAAGAAACAGATATAGAATTCTTTAAAA
ATTAAACAGTAACAGTTCAATACCAACATGGGAAAAAACAAGCACCATAA
TTCGTCGCTGCATGAAATGAGGATTGAAGAATGCAGATTCCTAGCATTAA
CACATCTTTGGCATCATTTCTCATTTAGATATTTCAGCACAGCTAAAAGT
ACACACATAAACAAAGCCGAGAGGATGACGGTGTCACGAACTACTCTTTG
GAGGATTTATTGATGAGGGACTTGTGGATATGAGGAATAACTCCTCCACC
GGCTATGGTTCCTTTAATGAGAGTGTCAAGTTCTTCATCTCCTCGGATAG
CAAGCTGCAAATGCCTTGGAGTAATACGTTTGACCTTCAAATCCTTGCTA
GCATTCCCTGCCAACTCCAACACTTCGGCAGTTAGATATTCCAAAATGGC
TGCTGTATAAACAGCAGCTGTTGCGCCAACCCTTCCGTGAGCAGCAGCCC
TTTCCTTTAGTAGACGATGGACCCTTCCCACTGGGAACTGAAGACCAGCA
CGAGAAGAACGGGAGACGGGTTTCTTCTTGTCCTTATCCTTGTTGTTGTT
AATGGTGGTTTTGCCTGTTATCAGTCCTTTGGCTCCTTTGCCCGACATTT
TCCCGCCTAATTGCTACAGCTTCTTTTAAATTAATTAATTATTTATTTAA
TTATTTTTAATTTTTTCTGAGATGAAAATTATCGGAGAAGAAAGAAAGAG
ATAAAGCCAAGCGAGCGTTTGAGATTTTTGTGTGTGAG