CB290686

Overview
NameCB290686
Unique NameCB290686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290686_ssr679 microsatellite CB290686_ssr679:679..690. BLAST: Citrus ESTs to Prunus persica proteins V1
CB290686_ssr738 microsatellite CB290686_ssr738:738..749. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:50..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.856e-11
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = -3 
Query:  265 RSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 561
            RS +A LQF V RV   LK+              Y AA+LE L AEVLE+A N ++  K   I PRH+ LA+R D E++ L  G TI+  GV+P   K L
Sbjct:   18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPV-YLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKEL 116
The following BLAST results are available for this feature:
BLAST of CB290686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A2_LILLO7.856e-1143.00Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290686 ID=CB290686; Name=CB290686; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTGAAACAAAGAAACAGATATAGAATTCTTTAAAA
ATTAAACAGTAACAGTTCAATACCAACATGGGAAAAAACAAGCACCATAA
TTCGTCGCTGCATGAAATGAGGATTGAAGAATGCAGATTCCTAGCATTAA
CACATCTTTGGCATCATTTCTCATTTAGATATTTCAGCACAGCTAAAAGT
ACACACATAAACAAAGCCGAGAGGATGACGGTGTCACGAACTACTCTTTG
GAGGATTTATTGATGAGGGACTTGTGGATATGAGGAATAACTCCTCCACC
GGCTATGGTTCCTTTAATGAGAGTGTCAAGTTCTTCATCTCCTCGGATAG
CAAGCTGCAAATGCCTTGGAGTAATACGTTTGACCTTCAAATCCTTGCTA
GCATTCCCTGCCAACTCCAACACTTCGGCAGTTAGATATTCCAAAATGGC
TGCTGTATAAACAGCAGCTGTTGCGCCAACCCTTCCGTGAGCAGCAGCCC
TTTCCTTTAGTAGACGATGGACCCTTCCCACTGGGAACTGAAGACCAGCA
CGAGAAGAACGGGAGACGGGTTTCTTCTTGTCCTTATCCTTGTTGTTGTT
AATGGTGGTTTTGCCTGTTATCAGTCCTTTGGCTCCTTTGCCCGACATTT
TCCCGCCTAATTGCTACAGCTTCTTTTAAATTAATTAATTATTTATTTAA
TTATTTTTAATTTTTTCTGAGATGAAAATTATCGGAGAAGAAAGAAAGAG
ATAAAGCCAAGCGAGCGTTTGAGATTTTTGTGTGTGAG
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