CB290686

Overview
NameCB290686
Unique NameCB290686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290686_ssr679 microsatellite CB290686_ssr679:679..690. BLAST: Citrus ESTs to Prunus persica proteins V1
CB290686_ssr738 microsatellite CB290686_ssr738:738..749. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:50..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_YEAST (Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.054e-31
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = -3 
Query:  244 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 564
            S S+RAGLQFPVGR+ R LK              +Y  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGD+ELD+LI+ TIA GGV+PHI+K+L+ K  K+
Sbjct:   24 SSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASGGVLPHINKALLLKVEKK 130
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_NEUCR (Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.799e-31
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = -3 
Query:  256 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 564
            S S+RAGLQFP GRV R LK+             VY  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+++L+ K
Sbjct:   29 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPHINRALLLK 131
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_MAGGR (Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.799e-31
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = -3 
Query:  256 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 564
            S S+RAGLQFP GRV R LK+             VY  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+++L+ K
Sbjct:   28 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPHINRALLLK 130
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.799e-31
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = -3 
Query:  256 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 564
            S S+RAGLQFP GRV R LK+             VY  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+++L+ K
Sbjct:   30 SHSARAGLQFPCGRVKRFLKQNTQQKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAYGGVLPHINRALLLK 132
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_CHAGB (Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.799e-31
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = -3 
Query:  256 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 564
            S S+RAGLQFP GRV R LK+             VY  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+PHI+++L+ K
Sbjct:   29 SHSARAGLQFPCGRVKRFLKQNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPHINRALLLK 131
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_NEOFI (Histone H2A.Z OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htz1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.786e-30
Identity = 69/103 (66.99%), Postives = 79/103 (76.70%), Query Frame = -3 
Query:  256 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 564
            S S++AGLQFP GRV R LK              VY  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_MONAN (Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.786e-30
Identity = 69/103 (66.99%), Postives = 79/103 (76.70%), Query Frame = -3 
Query:  256 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 564
            S S++AGLQFP GRV R LK              VY  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   24 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 126
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_EMENI (Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.786e-30
Identity = 69/103 (66.99%), Postives = 79/103 (76.70%), Query Frame = -3 
Query:  256 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 564
            S S++AGLQFP GRV R LK              VY  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPOR (Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.786e-30
Identity = 69/103 (66.99%), Postives = 79/103 (76.70%), Query Frame = -3 
Query:  256 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 564
            S S++AGLQFP GRV R LK              VY  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AZ_ASPNC (Histone H2A.Z OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.786e-30
Identity = 69/103 (66.99%), Postives = 79/103 (76.70%), Query Frame = -3 
Query:  256 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 564
            S S++AGLQFP GRV R LK              VY  A+LEYLTAEVLELAGNA+KDLKVKRITPRHLQLAIRGDEELDTLI+ TIA GGV+P I+++L+ K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAFGGVLPRINRALLLK 127
The following BLAST results are available for this feature:
BLAST of CB290686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2AZ_YEAST1.054e-3165.42Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 ... [more]
H2AZ_NEUCR1.799e-3168.93Histone H2A.Z OS=Neurospora crassa GN=htz-1 PE=3 S... [more]
H2AZ_MAGGR1.799e-3168.93Histone H2A.Z OS=Magnaporthe grisea GN=HTZ1 PE=3 S... [more]
H2AZ_GIBZE1.799e-3168.93Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1[more]
H2AZ_CHAGB1.799e-3168.93Histone H2A.Z OS=Chaetomium globosum GN=HTZ1 PE=3 ... [more]
H2AZ_NEOFI5.786e-3066.99Histone H2A.Z OS=Neosartorya fischeri (strain ATCC... [more]
H2AZ_MONAN5.786e-3066.99Histone H2A.Z OS=Monascus anka GN=HTZ1 PE=3 SV=1[more]
H2AZ_EMENI5.786e-3066.99Histone H2A.Z OS=Emericella nidulans GN=htz1 PE=3 ... [more]
H2AZ_ASPOR5.786e-3066.99Histone H2A.Z OS=Aspergillus oryzae GN=HTZ1 PE=3 S... [more]
H2AZ_ASPNC5.786e-3066.99Histone H2A.Z OS=Aspergillus niger (strain CBS 513... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290686 ID=CB290686; Name=CB290686; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTGAAACAAAGAAACAGATATAGAATTCTTTAAAA
ATTAAACAGTAACAGTTCAATACCAACATGGGAAAAAACAAGCACCATAA
TTCGTCGCTGCATGAAATGAGGATTGAAGAATGCAGATTCCTAGCATTAA
CACATCTTTGGCATCATTTCTCATTTAGATATTTCAGCACAGCTAAAAGT
ACACACATAAACAAAGCCGAGAGGATGACGGTGTCACGAACTACTCTTTG
GAGGATTTATTGATGAGGGACTTGTGGATATGAGGAATAACTCCTCCACC
GGCTATGGTTCCTTTAATGAGAGTGTCAAGTTCTTCATCTCCTCGGATAG
CAAGCTGCAAATGCCTTGGAGTAATACGTTTGACCTTCAAATCCTTGCTA
GCATTCCCTGCCAACTCCAACACTTCGGCAGTTAGATATTCCAAAATGGC
TGCTGTATAAACAGCAGCTGTTGCGCCAACCCTTCCGTGAGCAGCAGCCC
TTTCCTTTAGTAGACGATGGACCCTTCCCACTGGGAACTGAAGACCAGCA
CGAGAAGAACGGGAGACGGGTTTCTTCTTGTCCTTATCCTTGTTGTTGTT
AATGGTGGTTTTGCCTGTTATCAGTCCTTTGGCTCCTTTGCCCGACATTT
TCCCGCCTAATTGCTACAGCTTCTTTTAAATTAATTAATTATTTATTTAA
TTATTTTTAATTTTTTCTGAGATGAAAATTATCGGAGAAGAAAGAAAGAG
ATAAAGCCAAGCGAGCGTTTGAGATTTTTGTGTGTGAG
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