CB290686

Overview
NameCB290686
Unique NameCB290686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290686_ssr679 microsatellite CB290686_ssr679:679..690. BLAST: Citrus ESTs to Prunus persica proteins V1
CB290686_ssr738 microsatellite CB290686_ssr738:738..749. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:50..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_MYTGA (Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = -3 
Query:  244 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 564
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_MYTED (Histone H2A OS=Mytilus edulis PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = -3 
Query:  244 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 564
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_MYTCH (Histone H2A OS=Mytilus chilensis PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = -3 
Query:  244 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 564
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_MYTCA (Histone H2A OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = -3 
Query:  244 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 564
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = -3 
Query:  250 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 564
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K S
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = -3 
Query:  250 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 564
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = -3 
Query:  247 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 564
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.291e-25
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = -3 
Query:  247 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 564
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AJ_MACFA (Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.604e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = -3 
Query:  247 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 564
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
[Close]
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2AJ_HUMAN (Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.604e-25
Identity = 65/107 (60.75%), Postives = 78/107 (72.90%), Query Frame = -3 
Query:  247 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSSK 564
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K ++
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTE 122
The following BLAST results are available for this feature:
BLAST of CB290686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_MYTGA4.291e-2559.26Histone H2A OS=Mytilus galloprovincialis PE=3 SV=3[more]
H2A_MYTED4.291e-2559.26Histone H2A OS=Mytilus edulis PE=3 SV=3[more]
H2A_MYTCH4.291e-2559.26Histone H2A OS=Mytilus chilensis PE=3 SV=3[more]
H2A_MYTCA4.291e-2559.26Histone H2A OS=Mytilus californianus PE=3 SV=3[more]
H2AX_XENLA4.291e-2560.38Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2AX_HUMAN4.291e-2561.32Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]
H2A2B_MOUSE4.291e-2559.81Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN4.291e-2559.81Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2AJ_MACFA5.604e-2560.75Histone H2A.J OS=Macaca fascicularis GN=H2AFJ PE=2... [more]
H2AJ_HUMAN5.604e-2560.75Histone H2A.J OS=Homo sapiens GN=H2AFJ PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290686 ID=CB290686; Name=CB290686; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTGAAACAAAGAAACAGATATAGAATTCTTTAAAA
ATTAAACAGTAACAGTTCAATACCAACATGGGAAAAAACAAGCACCATAA
TTCGTCGCTGCATGAAATGAGGATTGAAGAATGCAGATTCCTAGCATTAA
CACATCTTTGGCATCATTTCTCATTTAGATATTTCAGCACAGCTAAAAGT
ACACACATAAACAAAGCCGAGAGGATGACGGTGTCACGAACTACTCTTTG
GAGGATTTATTGATGAGGGACTTGTGGATATGAGGAATAACTCCTCCACC
GGCTATGGTTCCTTTAATGAGAGTGTCAAGTTCTTCATCTCCTCGGATAG
CAAGCTGCAAATGCCTTGGAGTAATACGTTTGACCTTCAAATCCTTGCTA
GCATTCCCTGCCAACTCCAACACTTCGGCAGTTAGATATTCCAAAATGGC
TGCTGTATAAACAGCAGCTGTTGCGCCAACCCTTCCGTGAGCAGCAGCCC
TTTCCTTTAGTAGACGATGGACCCTTCCCACTGGGAACTGAAGACCAGCA
CGAGAAGAACGGGAGACGGGTTTCTTCTTGTCCTTATCCTTGTTGTTGTT
AATGGTGGTTTTGCCTGTTATCAGTCCTTTGGCTCCTTTGCCCGACATTT
TCCCGCCTAATTGCTACAGCTTCTTTTAAATTAATTAATTATTTATTTAA
TTATTTTTAATTTTTTCTGAGATGAAAATTATCGGAGAAGAAAGAAAGAG
ATAAAGCCAAGCGAGCGTTTGAGATTTTTGTGTGTGAG
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