CB290686

Overview
NameCB290686
Unique NameCB290686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290686_ssr679 microsatellite CB290686_ssr679:679..690. BLAST: Citrus ESTs to Prunus persica proteins V1
CB290686_ssr738 microsatellite CB290686_ssr738:738..749. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2239 contig Csv1_Contig2239:50..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = -3
Query:  244 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 564
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTEK 123          
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  244 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 564
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = -3
Query:  250 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 564
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 62/108 (57.41%), Postives = 79/108 (73.15%), Query Frame = -3
Query:  244 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 564
            SRSSRAGLQFPVGR+HRLL++              Y AA+LEYL+AE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV-YMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTEK 122          
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = -3
Query:  247 VSRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 567
            VSRSS+AGLQFPVGR+ R LK+              Y AA+LEYLTAEVLELAGNA++D K  RI PRH+QLAIR DEEL  L+   TIA GGV+P+IH  L+ K SK
Sbjct:   15 VSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPV-YLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSK 121          
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 65/106 (61.32%), Postives = 77/106 (72.64%), Query Frame = -3
Query:  250 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI-KGTIAGGGVIPHIHKSLINKSS 564
            SRSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ K +
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A1_XENLA (Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 7.319e-25
Identity = 63/107 (58.88%), Postives = 78/107 (72.90%), Query Frame = -3
Query:  247 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 564
            +RSSRAGLQFPVGRVHRLL++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPV-YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKTE 122          
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 9.559e-25
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = -3
Query:  244 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSKE 564
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K +++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTQK 122          
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_PARLI (Histone H2A OS=Paracentrotus lividus PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.248e-24
Identity = 63/106 (59.43%), Postives = 76/106 (71.70%), Query Frame = -3
Query:  250 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSS 564
            SRSSRAGLQFPVGRVHR L++              Y AA+LEYLTAE+LELAGNA++D K  RI PRHLQLA+R DEEL+ L+ G TIA GGV+P+I   L+ K +
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPV-YMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CB290686 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.248e-24
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = -3
Query:  247 SRSSRAGLQFPVGRVHRLLKEXXXXXXXXXXXXXVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSSK 564
            SRSSRAGLQFPVGR+HRLL++              Y AA++EYL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L+ K ++
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYGERVGAGAPV-YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 121          
The following BLAST results are available for this feature:
BLAST of CB290686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
H2A_ONCMY7.319e-2558.33Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2A_LITVA7.319e-2558.33Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A_CAIMO7.319e-2561.32Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2A_ACRFO7.319e-2557.41Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2A4_VOLCA7.319e-2560.19Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A4_CHICK7.319e-2561.32Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A1_XENLA7.319e-2558.88Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2[more]
H2A_SIPNU9.559e-2558.33Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_PARLI1.248e-2459.43Histone H2A OS=Paracentrotus lividus PE=3 SV=2[more]
H2A_CHITH1.248e-2458.88Histone H2A OS=Chironomus thummi thummi PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da01_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290686 ID=CB290686; Name=CB290686; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTGAAACAAAGAAACAGATATAGAATTCTTTAAAA
ATTAAACAGTAACAGTTCAATACCAACATGGGAAAAAACAAGCACCATAA
TTCGTCGCTGCATGAAATGAGGATTGAAGAATGCAGATTCCTAGCATTAA
CACATCTTTGGCATCATTTCTCATTTAGATATTTCAGCACAGCTAAAAGT
ACACACATAAACAAAGCCGAGAGGATGACGGTGTCACGAACTACTCTTTG
GAGGATTTATTGATGAGGGACTTGTGGATATGAGGAATAACTCCTCCACC
GGCTATGGTTCCTTTAATGAGAGTGTCAAGTTCTTCATCTCCTCGGATAG
CAAGCTGCAAATGCCTTGGAGTAATACGTTTGACCTTCAAATCCTTGCTA
GCATTCCCTGCCAACTCCAACACTTCGGCAGTTAGATATTCCAAAATGGC
TGCTGTATAAACAGCAGCTGTTGCGCCAACCCTTCCGTGAGCAGCAGCCC
TTTCCTTTAGTAGACGATGGACCCTTCCCACTGGGAACTGAAGACCAGCA
CGAGAAGAACGGGAGACGGGTTTCTTCTTGTCCTTATCCTTGTTGTTGTT
AATGGTGGTTTTGCCTGTTATCAGTCCTTTGGCTCCTTTGCCCGACATTT
TCCCGCCTAATTGCTACAGCTTCTTTTAAATTAATTAATTATTTATTTAA
TTATTTTTAATTTTTTCTGAGATGAAAATTATCGGAGAAGAAAGAAAGAG
ATAAAGCCAAGCGAGCGTTTGAGATTTTTGTGTGTGAG
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