CB290691

Overview
NameCB290691
Unique NameCB290691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.440e-25
Identity = 58/87 (66.67%), Postives = 68/87 (78.16%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            VLLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI K+QIM  I DD VS+D L E+   +E   ++VQS DI AFNKI
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSIDLLQEK---IEEFEDFVQSVDIAAFNKI 222
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.440e-25
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDMK++E  VR++EM GL WGASKLVPVGYGI K+QIM  I DD VSVD L E+   ++   ++VQS DI AFNKI
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK---IQEFEDFVQSVDIAAFNKI 222
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 57/87 (65.52%), Postives = 65/87 (74.71%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM KLEE VR+V+M GL WG+SKLVPVGYGIKK+QI   + DD V  D L EE   +    +YVQS DI AFNKI
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEE---ITKFEDYVQSVDIAAFNKI 265
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 1.211e-24
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM KLEE VRS++M GL WGASKLVPVGYGIKK+QI   + DD V  D ++EE++T     ++VQS D+ AFNKI
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEENITA--FEDFVQSMDVAAFNKI 228
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T    +EYVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FDEYVQSMDVAAFNKI 225
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T     +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T     +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T     +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.010e-24
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM KLEE VRS++  GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T     +YVQS D+ AFNKI
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-MLEEQITA--FEDYVQSMDVAAFNKI 225
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.850e-24
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLD+KPWDDETDM  +E  VRS+ M GL WGASKLVPV +G+KK+QI   + DD VSVD L+E+   +E   +YVQS DI AFNKI
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKVSVDELVEK---IEAFEDYVQSVDIAAFNKI 237
The following BLAST results are available for this feature:
BLAST of CB290691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_DROME2.440e-2566.67Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B2_BOMMO2.440e-2565.52Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1D_XENLA1.211e-2465.52Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_XENTR1.211e-2464.37Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1B_BOVIN1.582e-2464.37Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_MOUSE4.602e-2463.22Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN4.602e-2463.22Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK4.602e-2463.22Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_RABIT6.010e-2463.22Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]
EF1D_ARTSA7.850e-2460.92Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01da04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290691 ID=CB290691; Name=CB290691; organism=Citrus sinensis; type=EST; length=770bp
GCCTGTGTTGAAGTTGTGCGCATCTTCTTGCCTCTGCCTTGAAGACTAAA
ATGGCCATCACCTTTTCAGATCTCCACACAGAGTCAGGCCTTAAGTCTCT
TGATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAA
AAGATGACATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCT
TTCCCCAACGCCAGCAGGTGGTACGACAGCGTTTCTTCACATATCGCCCC
AAGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTC
CAGTTGACGCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGAT
GATGATTTGGATCTCTTCGGAGATGAGACTGAGGAGGATAAGAAAGCAGC
AGAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTG
GAAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGAC
ATGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTT
TTGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGATGC
AGATCATGATGACAATCATTGATGATCTTGTTTCTGTGGATTCACTCATA
GAGGAACACCTCACAGTTGAGCCCTGCAATGAGTATGTTCAGAGCTGCGA
CATCGTTGCCTTCAATAAAATTTAAGAATCCTCTCACTGTTTTGCCTTAT
AGTGCAGCCATTTTTGGCTG
back to top