CB290691

Overview
NameCB290691
Unique NameCB290691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 54/87 (62.07%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM KLEE +RS++M GL WG+SKLVPVGYGIKK+QI   + DD V  D ++EE +T     ++VQS D+ AFNKI
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTD-VLEEKITA--FEDFVQSMDVAAFNKI 227
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1D_RABIT (Elongation factor 1-delta OS=Oryctolagus cuniculus GN=EEF1D PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23
Identity = 56/87 (64.37%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM +LE  VRSV++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T     E+VQS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMARLEACVRSVQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFNKI 280
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1D_RAT (Elongation factor 1-delta OS=Rattus norvegicus GN=Eef1d PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T     E+VQS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFNKI 281
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1D_MACFA (Elongation factor 1-delta OS=Macaca fascicularis GN=EEF1D PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T     E+VQS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFNKI 281
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1D_HUMAN (Elongation factor 1-delta OS=Homo sapiens GN=EEF1D PE=1 SV=5)

HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23
Identity = 55/87 (63.22%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T     E+VQS DI AFNKI
Sbjct:  198 ILLDVKPWDDETDMAQLEACVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFNKI 281
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1D_BOVIN (Elongation factor 1-delta OS=Bos taurus GN=EEF1D PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.896e-23
Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM +LE  VRSV++ GL WG+SKLVPVGYGI+K+QI   + DD V  D L EE   +    E+VQS DI AFNKI
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVVEDDKVGTDQLEEE---ITKFEEHVQSVDIAAFNKI 280
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1D_MOUSE (Elongation factor 1-delta OS=Mus musculus GN=Eef1d PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.134e-22
Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            +LLDVKPWDDETDM +LE  VRS+++ GL WGASKLVPVGYGI+K+QI   + DD V  D L+EE +T     E+VQS DI AF+KI
Sbjct:  198 ILLDVKPWDDETDMAQLETCVRSIQLDGLVWGASKLVPVGYGIRKLQIQCVVEDDKVGTD-LLEEEIT--KFEEHVQSVDIAAFDKI 281
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B2_CAEEL (Probable elongation factor 1-beta/1-delta 2 OS=Caenorhabditis elegans GN=Y41E3.10 PE=1 SV=4)

HSP 1 Score: 107.071 bits (266), Expect = 1.134e-22
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+P+GYGIKK+QI+  I D  VSVD LIE+        ++VQS DIVAFNKI
Sbjct:  179 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK--ITGDFEDHVQSVDIVAFNKI 263
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B1_CAEEL (Probable elongation factor 1-beta/1-delta 1 OS=Caenorhabditis elegans GN=F54H12.6 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.134e-22
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            V+LDVKPWDDETD+ ++E+ VRS+EM GL WG +KL+P+GYGIKK+QI+  I D  VSVD LIE+        ++VQS DIVAFNKI
Sbjct:  129 VILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK--ITGDFEDHVQSVDIVAFNKI 213
[Close]
BLAST of CB290691 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.933e-22
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 3 
Query:  462 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 722
            V+LD+KPWDDETDM ++E+ VRSV+M GL WGA+KL+P+ YGIKK+ IM  + DD VS+D L E+   +    ++VQS DI AFNK+
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSIDELQEK---ISEFEDFVQSVDIAAFNKV 207
The following BLAST results are available for this feature:
BLAST of CB290691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B_XENLA1.025e-2362.07Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]
EF1D_RABIT1.749e-2364.37Elongation factor 1-delta OS=Oryctolagus cuniculus... [more]
EF1D_RAT2.983e-2363.22Elongation factor 1-delta OS=Rattus norvegicus GN=... [more]
EF1D_MACFA2.983e-2363.22Elongation factor 1-delta OS=Macaca fascicularis G... [more]
EF1D_HUMAN2.983e-2363.22Elongation factor 1-delta OS=Homo sapiens GN=EEF1D... [more]
EF1D_BOVIN3.896e-2362.07Elongation factor 1-delta OS=Bos taurus GN=EEF1D P... [more]
EF1D_MOUSE1.134e-2262.07Elongation factor 1-delta OS=Mus musculus GN=Eef1d... [more]
EF1B2_CAEEL1.134e-2260.92Probable elongation factor 1-beta/1-delta 2 OS=Cae... [more]
EF1B1_CAEEL1.134e-2260.92Probable elongation factor 1-beta/1-delta 1 OS=Cae... [more]
EF1B_ARTSA1.933e-2256.32Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290691 ID=CB290691; Name=CB290691; organism=Citrus sinensis; type=EST; length=770bp
GCCTGTGTTGAAGTTGTGCGCATCTTCTTGCCTCTGCCTTGAAGACTAAA
ATGGCCATCACCTTTTCAGATCTCCACACAGAGTCAGGCCTTAAGTCTCT
TGATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAA
AAGATGACATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCT
TTCCCCAACGCCAGCAGGTGGTACGACAGCGTTTCTTCACATATCGCCCC
AAGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTC
CAGTTGACGCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGAT
GATGATTTGGATCTCTTCGGAGATGAGACTGAGGAGGATAAGAAAGCAGC
AGAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTG
GAAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGAC
ATGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTT
TTGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGATGC
AGATCATGATGACAATCATTGATGATCTTGTTTCTGTGGATTCACTCATA
GAGGAACACCTCACAGTTGAGCCCTGCAATGAGTATGTTCAGAGCTGCGA
CATCGTTGCCTTCAATAAAATTTAAGAATCCTCTCACTGTTTTGCCTTAT
AGTGCAGCCATTTTTGGCTG
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