CB290698

Overview
NameCB290698
Unique NameCB290698
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL17_ASPFU (60S ribosomal protein L17 OS=Aspergillus fumigatus GN=rpl17 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.805e-42
Identity = 86/151 (56.95%), Postives = 109/151 (72.19%), Query Frame = -3
Query:  308 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 760
            V+Y+ +     KS +ARGS LRV FKNTRE A A+  + L +A  +LE+V    + +PF R+   +GRTAQ K    + + RWPVKSA+F+LDLLKNAE+NA+ KGLD   L + HIQVNQA K RRRTYRAHGRINPYM++PCHIEL L+
Sbjct:    9 VRYAAQDIPAAKSARARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQWGVS-KARWPVKSAQFLLDLLKNAEANADTKGLDTGNLIVKHIQVNQAPKGRRRTYRAHGRINPYMTNPCHIELILT 158          
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL22_METBU (50S ribosomal protein L22P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.996e-21
Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = -3
Query:  308 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 760
            +KY+ E D  T S KA GS+L +  K +RE   A++ +    A++YLEDV+  KQA+PF R    +G       + P   GR+PVK A  +L LLKNAESNAE KGL+ + ++I+H  +N+ +       RA GR +P  +   ++E+ +S
Sbjct:    4 IKYTTELDAET-SAKAMGSELHISPKKSRELCKAIKGMRTNAARQYLEDVVILKQAVPFGRHNDSLGH-----RKGPMAAGRYPVKVASEMLKLLKNAESNAEYKGLNPEHMFIAHTAMNRGRVIHGMRPRARGRASPENTETVNLEMIIS 148          
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL22_METMA (50S ribosomal protein L22P OS=Methanosarcina mazei GN=rpl22p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 58/151 (38.41%), Postives = 87/151 (57.62%), Query Frame = -3
Query:  308 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 760
            + YS   D P  + KA GS+L +  K +RE    ++ +  ++A+++LEDV+A KQA+PF R   G G       + P   GR+PV ++K IL +LKNAESNAE KGL+   +YI H  + + +       RA GR +P  +   +IE+ LS
Sbjct:    4 INYSINAD-PENTSKAMGSELHISPKKSREVCCKIKGMKASEARKFLEDVIAMKQAVPFKRHSEGAGH-----RKGPMAGGRYPVSASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRASPKDTETVNIEMILS 148          
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL22_METBF (50S ribosomal protein L22P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = -3
Query:  308 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 760
            + YS + D  T S KA GS+L +  K +RE    ++ + + +A+++LEDV+A KQA+PF R   G G       + P   GR+PV ++K IL +L+NAESNAE KGL+   +YI+H  + + +  R    RA GR  P  +   +IE+ LS
Sbjct:    4 INYSVKEDPETTS-KAMGSELHISPKKSREVCCKIKGMKVPEARKFLEDVIALKQAVPFKRHHDGSGH-----RKGPMAAGRYPVSASKEILKILRNAESNAEYKGLEPANMYITHAAIQRGRVIRGFMPRARGRATPKDTETVNIEMILS 148          
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL22_METS3 (50S ribosomal protein L22P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-21
Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = -3
Query:  311 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 754
            Y+KE  N  K+ +A    L++  K+  E  +A+R + +TKAK YLEDV+  K+++PF R  R VG     K +     GR+PVK+A+ +L +L+NAE+NAE KG+D + L+I HI  ++         RA GR+ P+ +   HI++ L
Sbjct:    7 YNKET-NEAKTARAMAKSLKISPKHCVEICNAIRGMEVTKAKNYLEDVIDMKKSVPFKRHNRQVG---HRKGQEGWAAGRYPVKAAEQVLKVLENAEANAEYKGMDTENLFIEHISSHRGVVLPGVIPRAFGRMTPFNTPTTHIQIVL 150          
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL22_ARCFU (50S ribosomal protein L22P OS=Archaeoglobus fulgidus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.312e-20
Identity = 56/148 (37.84%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  317 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 760
            V Y+ +P++ TK+ KA G ++ + FK+  E   A+R   + +A++ LEDV+  K+AIPF R  + V   A  +       GR+P K+AK++L +L+N E+NAE KGLDV+ L I H Q  + +   R   RA GR  P       +EL
Sbjct:    6 VNYAYKPEDETKAAKAMGYEMPISFKHAVEICRAIRGKKIEEARKLLEDVVEMKRAIPFKRHKKKV---AHRRGLEKWYAGRYPQKAAKYVLKVLRNLEANAEYKGLDVENLVIVHAQAQKGRVIERYMPRAFGRATPRFQQLTTVEL 150          
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL22_METAC (50S ribosomal protein L22P OS=Methanosarcina acetivorans GN=rpl22p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19
Identity = 56/151 (37.09%), Postives = 86/151 (56.95%), Query Frame = -3
Query:  308 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 760
            + YS   D  T S KA GS+L +  K +RE    ++ +  ++A+++LEDV+A KQA+PF +   G G       + P   G++P+ ++K IL +LKNAESNAE KGL+   +YI H  + + +       RA GR  P  +   +IE+ LS
Sbjct:    4 INYSINGDPETTS-KAMGSELHISPKKSREVCCKIKGMKASEARKFLEDVIAMKQAVPFKKHHDGSGH-----RKGPMAAGKYPISASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRATPKDTETVNIEMILS 148          
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL22_PYRKO (50S ribosomal protein L22P OS=Pyrococcus kodakaraensis GN=rpl22p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.662e-19
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = -3
Query:  311 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 754
            YS +  +P +  +A G DLR+  K++ E    +R + L  A RYL+DV+A K+ +P  RF    G     K     G GR+PVK AK +  +L NA++NAE KGLDVD L I H   ++    R    RA GR  P+     HIE+ +
Sbjct:    8 YSFQNFDPERMARASGRDLRISPKHSVELLREIRGMMLNDALRYLDDVIAKKRPVPMKRFNDSQGH----KPGKGFGPGRYPVKVAKAVKKILLNAKNNAEQKGLDVDRLKIIHAAAHRGPVLRGYIPRAFGRATPFNEQTTHIEIVV 151          
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL22_IGNH4 (50S ribosomal protein L22P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.662e-19
Identity = 53/140 (37.86%), Postives = 78/140 (55.71%), Query Frame = -3
Query:  317 NPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 736
            NP K+ KA   D  +  K   E A  +R + LT+AK YLE V+  ++ +P+ R+   V       +++    GR+PVK+AK+ L LLKN E+NAE KGL+V+ L I HI  ++    +R   RA GR  P      H+E+
Sbjct:   14 NPEKTAKAMMWDAPISPKEATELARVIRGMKLTEAKAYLERVIKMEEPVPYRRYHGKVAHKRGLADKHGIPMGRYPVKAAKYFLKLLKNVEANAEFKGLEVEKLKIVHIASHKGMTIKRWMPRAFGRATPEFERRTHLEV 153          
BLAST of CB290698 vs. ExPASy Swiss-Prot
Match: RL22_METST (50S ribosomal protein L22P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 57/148 (38.51%), Postives = 83/148 (56.08%), Query Frame = -3
Query:  311 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 754
            YS +P    K  KA G  L++  K++ E    +R + L  AK +LEDV+A K  +PF R  + VG  +  K       GR+PVK+A  IL +L+NAE+NAE + LDV+ L + H+  N+    R  T RA GR +P  +   HI++ L
Sbjct:    7 YSYQPKADEKIAKAAGHSLKISPKHSVEICRTIRNMYLEDAKAFLEDVIAKKTVVPFKRHNKKVGHRSDLKGWP---SGRYPVKAAAAILKVLENAEANAENEELDVENLKLVHVCANRGVIIRGWTPRAFGRASPSNTPTTHIQIVL 151          
The following BLAST results are available for this feature:
BLAST of CB290698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL17_ASPFU1.805e-4256.9560S ribosomal protein L17 OS=Aspergillus fumigatus... [more]
RL22_METBU2.996e-2139.0750S ribosomal protein L22P OS=Methanococcoides bur... [more]
RL22_METMA5.110e-2138.4150S ribosomal protein L22P OS=Methanosarcina mazei... [more]
RL22_METBF5.110e-2139.0750S ribosomal protein L22P OS=Methanosarcina barke... [more]
RL22_METS36.673e-2138.5150S ribosomal protein L22P OS=Methanobrevibacter s... [more]
RL22_ARCFU3.312e-2037.8450S ribosomal protein L22P OS=Archaeoglobus fulgid... [more]
RL22_METAC2.804e-1937.0950S ribosomal protein L22P OS=Methanosarcina aceti... [more]
RL22_PYRKO3.662e-1938.5150S ribosomal protein L22P OS=Pyrococcus kodakarae... [more]
RL22_IGNH43.662e-1937.8650S ribosomal protein L22P OS=Ignicoccus hospitali... [more]
RL22_METST4.782e-1938.5150S ribosomal protein L22P OS=Methanosphaera stadt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290698 ID=CB290698; Name=CB290698; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTGTTGCGGCAAAGTCAACCTCAACATACCCTTCATC
AAAATTCCACTGAGAACTATCATGGTAAGCGACCCTTGGCAAGACAGAAT
AAAACTAAATACTGAACCAACAGAAGTCTTCAGGAACAAGTATCTTGTAA
ACAAAATTGTATGTTGTCATGGTAGTACAAAGGGGGAAAAAAGAGAAATC
AAGTCAGGACTCCCAACATTCAAGATAAGGCACCACTATGTAGCTGTCCT
CGGTTTCCTGGAAGCCAACTGGGTCTCCGGCTCTTTCTTCACAGGTTCCT
CCTTTTCTGAGAGTGTCAACTCAATATGACATGGGGAAGACATGTATGGG
TTAATCCTTCCATGTGCACGATAAGTCCGACGCCTCTGCTTCTGGGCTTG
ATTCACTTGGATGTGAGAAATGTAAAGCGCGTCCACATCTAAGCCTTTCA
CCTCTGCATTACTCTCAGCATTCTTGAGTAAATCCAGAATGAACTTTGCA
GATTTAACCGGCCAGCGACCTTGACCATTTGGATTACGGTTTTTAGCCTG
TGCAGTTCGCCCAACACCGCGACAGAAGCGGGTGAATGGTATGGCTTGCT
TGTGAGCCATAACATCCTCCAAGTACCTTTTAGCCTTGGTCAAAGACAGC
TTTCTAAGAGCATGGGCTGCCTCCCTAGTGTTCTTGAAGTGAACACGGAG
ATCAGAGCCTCTAGCTTTGCATGACTTGGTGGGATTGTCCGGCTCTTTCG
AATACTTCACCATGGCTGCTGCTGCTGCTCTTCTCAGCGTTGCGTTTTTC
CCTCGTG
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