CB290699

Overview
NameCB290699
Unique NameCB290699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METJA (50S ribosomal protein L22P OS=Methanocaldococcus jannaschii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.960e-19
Identity = 52/142 (36.62%), Postives = 83/142 (58.45%), Query Frame = 3
Query:   66 NPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            NP K+ +A G ++ +  K+ RE   ++  + L +A ++LEDV+A ++ + F R C+ VG     K +     GR+PVK+AK IL +L++A++NAE KGL+ + L I HI  N+    +R   RA GR  P      HI++ L
Sbjct:   14 NPEKTARAMGRNIPISRKHAREICKSINGMKLDEAIKFLEDVIAMRRPVLFRRHCKKVGHR---KGKLGWPAGRYPVKAAKAILKILQHAKANAEYKGLNTEKLRIKHISTNKGITIKRYMPRAFGRATPKFQETVHIQVIL 152          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METTH (50S ribosomal protein L22P OS=Methanobacterium thermoautotrophicum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.328e-18
Identity = 53/150 (35.33%), Postives = 87/150 (58.00%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            VKY+ + ++ + + +A  + L++  K+  E    +R + L KAK+YLE+V+  ++ + F R+ R VG     +  N    GR+PVK+A  IL +L+NAE+NAE KGLD + L I HI  ++    R    RA GR  P+ +   H+++ L
Sbjct:    4 VKYAYKEEDRSGTARASATHLKISPKHAVEICREIRGMELEKAKKYLEEVIRMERPVAFKRYNRKVGHR---RGLNGWASGRYPVKAAGQILKVLENAEANAEYKGLDTEKLRIIHISSHRGPVIRGWIPRAFGRATPFNTPTTHVQIVL 150          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.607e-18
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            M  YS   D    + +AR  +  +  K+    AH +R + L  AK+ LEDV++ K AIP+ R+   V       +R   G GR+PVK+AK  +DLL N E+NAE KG++ D+L I H+  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:    1 MKGYSMSVDE--NNARARIVEADISLKDAVNIAHHIRGMKLDYAKQILEDVVSKKYAIPYFRYLDSVS------HRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVIVT 144          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_PYRHO (50S ribosomal protein L22P OS=Pyrococcus horikoshii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 57/148 (38.51%), Postives = 78/148 (52.70%), Query Frame = 3
Query:   48 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            YS +  +P +  +A G DLR+  K   E    LR + L  A RYL++V+A K+ +P  R+    G     K     G GR+PVK AK I  +L NA++NAE KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:    7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDEVIALKRPVPLRRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAKNNAEQKGLDPDKLKIIHIAAHRGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METKA (50S ribosomal protein L22P OS=Methanopyrus kandleri GN=rpl22p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.468e-17
Identity = 56/150 (37.33%), Postives = 86/150 (57.33%), Query Frame = 3
Query:   48 YSKEPD--NPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            YS  P+  +  ++ KA   +LR+  K+ RE   A+R + L +AK +L  V+  ++A+PF +  + V    Q   R     GR+P K+A+ IL +L++AE+NAE KGLD D LYI HI  ++ +  R    RA GR  P+ +   HIE+ L
Sbjct:    9 YSIPPEELDDERTAKAFIRELRISPKHAREICRAIRGMPLDRAKEFLRRVIRKEEAVPFRKHKKKVPHRRQI--RPGWDAGRFPEKAAREILRVLEHAEANAEYKGLDTDRLYIKHIAAHKGRVIRGWIPRAFGRATPFNTPTTHIEVIL 156          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_STAMF (50S ribosomal protein L22P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.917e-17
Identity = 56/150 (37.33%), Postives = 88/150 (58.67%), Query Frame = 3
Query:   48 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVG--RTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            YS +  + ++  KA   D+ V  K+ REA  A+R   +++AK+ LE+V+A ++ IPF R+   +   R   AK + P G  R+PVK+AK++L LL++ E+NA+ KGLD D L I HI  ++    +R   RA GR  P      H+E+ +
Sbjct:    6 YSYKLRDESRIAKAVQFDIPVSIKDMREAVAAIRGKKVSEAKKLLENVIALREPIPFKRYKGKLSHKRGLPAKWKWPIG--RYPVKAAKYLLRLLEHVEANADNKGLDKDKLVIVHIAAHKGMTLKRWMPRAFGRATPKFRRTSHVEIVV 153          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_THEPD (50S ribosomal protein L22P OS=Thermofilum pendens (strain Hrk 5) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.271e-17
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 3
Query:   45 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            +YS E + P ++ KA   D+ + +K T E    ++  S+ +A+R L ++   K+++P  R+ + VG  +        G GR+PVK AK +L LL N E+NAE KGL+V+ L I H   ++  K R    RA GR  PY     H+E+
Sbjct:    5 RYSVELE-PERTAKASLRDVSMSYKLTVETLRLIKGKSIEEARRILTEIAEMKRSVPLKRYNKKVGHRSDVP-----GPGRYPVKVAKNLLKLLDNLENNAEFKGLNVENLRIVHAAAHKGMKIRNYLPRAFGRATPYYDQLVHVEI 145          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_PYRAB (50S ribosomal protein L22P OS=Pyrococcus abyssi GN=rpl22p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.271e-17
Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = 3
Query:   48 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            YS +  +P +  +A G DLR+  K   E    LR + L  A RYL+DV+A ++ +P  R+    G     K     G GR+PVK AK I  +L NA++NA+ KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:    7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVVV 150          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_PYRFU (50S ribosomal protein L22P OS=Pyrococcus furiosus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 55/148 (37.16%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   48 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            YS +  +P +  +A   DLR+  K   E    LR + L  A RYL+DV+A K+ +P  R+    G     K     G GR+PVK AK I  +L N ++NA  KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:    7 YSFQNFDPKRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METMJ (50S ribosomal protein L22P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.723e-16
Identity = 52/137 (37.96%), Postives = 79/137 (57.66%), Query Frame = 3
Query:   84 KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            +A+ ++L V  K++ E A  ++ ++ T+AK YL DV+A K+AIPF RF R V   A  +  +    GR+PVK+A+  + LL++ E NAE  GLDV+ L I H   N  +  R    RA GR  P      +IE+ ++
Sbjct:   17 RAKANELPVSPKHSIEIARFIKNMTTTEAKAYLTDVVALKKAIPFKRFNRNV---AHKRGLSKWPAGRYPVKAAEAYIRLLESVEKNAEYIGLDVENLRIDHAAANTGRGLRAFFPRAMGRATPKRRETVNIEIVVT 150          
The following BLAST results are available for this feature:
BLAST of CB290699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL22_METJA5.960e-1936.6250S ribosomal protein L22P OS=Methanocaldococcus j... [more]
RL22_METTH1.328e-1835.3350S ribosomal protein L22P OS=Methanobacterium the... [more]
RL22_THEVO8.607e-1834.2150S ribosomal protein L22P OS=Thermoplasma volcani... [more]
RL22_PYRHO1.468e-1738.5150S ribosomal protein L22P OS=Pyrococcus horikoshi... [more]
RL22_METKA1.468e-1737.3350S ribosomal protein L22P OS=Methanopyrus kandler... [more]
RL22_STAMF1.917e-1737.3350S ribosomal protein L22P OS=Staphylothermus mari... [more]
RL22_THEPD4.271e-1735.3750S ribosomal protein L22P OS=Thermofilum pendens ... [more]
RL22_PYRAB4.271e-1737.8450S ribosomal protein L22P OS=Pyrococcus abyssi GN... [more]
RL22_PYRFU4.723e-1637.1650S ribosomal protein L22P OS=Pyrococcus furiosus ... [more]
RL22_METMJ4.723e-1637.9650S ribosomal protein L22P OS=Methanoculleus maris... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290699 ID=CB290699; Name=CB290699; organism=Citrus sinensis; type=EST; length=785bp
GGAAAAACGCAACGCTGAGAAGAGCAGCAGCAGCAGCCATGGTGAAGTAT
TCGAAAGAGCCGGACAATCCCACCAAGTCATGCAAAGCTAGAGGCTCTGA
TCTCCGTGTTCACTTCAAGAACACTAGGGAGGCAGCCCATGCTCTTAGAA
AGCTGTCTTTGACCAAGGCTAAAAGGTACTTGGAGGATGTTATGGCTCAC
AAGCAAGCCATACCATTCACCCGCTTCTGTCGCGGTGTTGGGCGAACTGC
ACAGGCTAAAAACCGTAATCCAAATGGTCAAGGTCGCTGGCCGGTTAAAT
CTGCAAAGTTCATTCTGGATTTACTCAAGAATGCTGAGAGTAATGCAGAG
GTGAAAGGCTTAGATGTGGACGCGCTTTACATTTCTCACATCCAAGTGAA
TCAAGCCCAGAAGCAGAGGCGTCGGACTTATCGTGCACATGGAAGGATTA
ACCCATACATGTCTTCCCCATGTCATATTGAGTTGACACTCTCAGAAAAG
GAGGAACCTGTGAAGAAAGAGCCGGAGACCCAGTTGGCTTCCAGGAAACC
GAGGACAGCTACATAGTGGTGCCTTATCTTGAATGTTGGGAGTCCTGACT
TGATTTCTCTTTTTTCCCCCTTTGTACTACCATGACAACATACAATTTTG
TTTACAAGATACTTGTTCCTGAAGACTTCTGTTGGTTCAGTATTTAGTTT
TATTCTGTCTTGCCATGGCTCGCTTACCATGATAGTTCTCAGTGGAATTT
TGATGGTGGGTATGTTGAGGTTGACTTTGCCGCAA
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