CB290699

Overview
NameCB290699
Unique NameCB290699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_HYPBU (50S ribosomal protein L22P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 3
Query:   75 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFC--RGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            KS KA   D  + +K   E A  L+ + + +A+R+LE V   ++ IP  R+   +   R   AK + P G  R+PVK+AK +L LL N  +NAEVKGLD + L I HI V++ +  +R   RA GR  P      HIE+ ++
Sbjct:   14 KSAKAMVWDAPISYKKIVELARLLKGMKVDEARRFLERVARGEEPIPVRRYSGKQAHHRGLAAKYKWPIG--RYPVKAAKILLRLLDNVTNNAEVKGLDTERLRIVHIAVHKGRVLKRWMPRAFGRATPKFKKYSHIEIVVA 153          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_META3 (50S ribosomal protein L22P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.052e-15
Identity = 52/150 (34.67%), Postives = 78/150 (52.00%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            + Y  E D P K+ +A G  LR+  K+T E    +  + L KA  YL  V+  KQ +PF R  + V      K +     GR+P K++  IL +L+NA+ NAE KG++ + L I HI  N+    +R   RA GR +P      H+++ L
Sbjct:    4 LNYKVETD-PNKTARAMGRSLRISRKHTIEICREISGMKLDKAIAYLNRVIELKQVVPFKRHGKDV---PHKKGKYGWTAGRFPQKASTQILSVLENAKKNAEYKGMNTEKLRIKHISSNKGFTIKRHMPRAFGRASPKNQETVHVQVIL 149          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_HALWD (50S ribosomal protein L22P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.795e-15
Identity = 43/150 (28.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            + YS + D P  + +    D  +  K+++  A  ++ +++  A+ YL+DV+A +Q++PF +   GVG  +     +    GR+P K++K  L+L++N  SNA  +G D +A+ I H+  ++  +++ R  RA G  +P+ ++ C +EL +
Sbjct:    3 INYSVKAD-PETTARGMLRDRPISLKHSKAIAREIKGMTIADAESYLDDVIAQRQSVPFRQHNSGVGHRSDIDGWDA---GRYPEKASKAFLELIENVASNANEQGFDGNAMAIRHVAAHKVGERQGRKPRAFGSADPWNTTICDVELII 148          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_SULAC (50S ribosomal protein L22P OS=Sulfolobus acidocaldarius GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.061e-15
Identity = 46/139 (33.09%), Postives = 73/139 (52.52%), Query Frame = 3
Query:   75 KSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            K  KA   ++    ++      A+R ++L +A+ +L +V+  K+A+PF R+  G    +    +     GR+P K+ K++L LL NAE+NA  KGLD+D L I HI  ++    +R   RA GR         HIE+ L
Sbjct:   15 KLAKAVIKNIDASVRDLYNVCKAIRGMNLKEAREFLNNVLEEKEALPFWRYSHGTSHRSNISRKWKVKSGRYPKKAIKYVLKLLDNAENNANSKGLDIDNLKIVHIAAHKGLVLKRYMTRAFGRSTRKYKYLSHIEVIL 153          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_CENSY (50S ribosomal protein L22P OS=Cenarchaeum symbiosum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.998e-15
Identity = 54/148 (36.49%), Postives = 83/148 (56.08%), Query Frame = 3
Query:   48 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            YS E  +PT+  +A   + ++  K+ RE +  +R +++ KA+ +L+ V+  K+A+PF RF R VG      +R+  G   GR+P KSA   + LL N ESNAE KG+D+D L I     ++    +R   RA GR  P  +   H+EL
Sbjct:    6 YSFEGYDPTRHVRASLREKQISHKHAREISLHIRGMTVEKARDFLQAVIEKKRAVPFRRFKRQVG------HRSDPGVMAGRYPEKSAAEFIKLLDNLESNAEYKGMDLDRLTIVGAVAHKGILIKRFIPRAMGRSTPKNNVLTHVEL 147          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_THEAC (50S ribosomal protein L22P OS=Thermoplasma acidophilum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 51/152 (33.55%), Postives = 81/152 (53.29%), Query Frame = 3
Query:   39 MVKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            M  YS E +      KAR  +  +  K++   AH LR + L++AK  ++ V+    AIP+ R+   V       +R   G GR+PVK+AK    LL+N E+NAE KGL+ D L I HI  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:    4 MKGYSMEIEG--NHAKARIREADISLKDSVNIAHHLRGMPLSRAKEIIDAVINKTYAIPYFRYLDSVS------HRPGVGPGRYPVKAAKAFKQLLENVENNAEFKGLNTDNLVIKHIAANKGRMIKKYTPKAYGRAGANFKDLINLEIIVT 147          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_HALMA (50S ribosomal protein L22P OS=Haloarcula marismortui GN=rpl22p PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 49/150 (32.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            + YS E D P  + KA   + ++ FK+++  A  ++  +  +A  YLE V+   Q +PF +   GVG  ++    +    GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  ++  +Q+ R  RA GR + + S    +EL L
Sbjct:    3 ISYSVEAD-PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDA---GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELIL 148          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_CALMQ (50S ribosomal protein L22P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 50/137 (36.50%), Postives = 72/137 (52.55%), Query Frame = 3
Query:   84 KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNP-NGQ--GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            KARG + R+ +K   E A A+R L++ +A+ Y+E V   K  IP   F R      QA +  P +G    +WPVK A   L +L+N ESNA  +GL++D   I H   ++  + R    RA GR  P+     +IEL
Sbjct:   30 KARGFEFRISWKKAIETARAIRFLTIKQAEDYMEKVKDLKAPIPIKEFTR-----KQAHHNVPWDGWPVAKWPVKVADSFLQVLRNLESNASYRGLNIDNTVIVHASASRGMRIRNYMPRALGRATPWFQDTVNIEL 161          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_UNCMA (50S ribosomal protein L22P OS=Uncultured methanogenic archaeon RC-I GN=rpl22p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.773e-14
Identity = 51/152 (33.55%), Postives = 83/152 (54.61%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            V Y+ E D P  + KA   ++ V  K+ +E    +R + L+ AK YL+DV+  K+++PF +  R VG       R+ +G   GR+PVK++  IL LLK+AE+NAE KGL+ + + I H    + +  +    RA GR   +      +E+ +
Sbjct:    4 VGYTAEFD-PATTAKAMAYEINVSPKHCQEICRQIRGMKLSAAKTYLQDVIDKKRSVPFKQHARNVGH-----KRHQSGWPSGRYPVKASTEILKLLKHAEANAEYKGLETENMRIIHSTSKKGRVIQGIMPRAMGRATAWNIELVTVEVVI 149          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_PYRCJ (50S ribosomal protein L22P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 48/139 (34.53%), Postives = 73/139 (52.52%), Query Frame = 3
Query:   69 PTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            P +  KA   + R+ +K + E A  ++ ++L +AK +LEDV+  K+ IP   F +     A      P    +WPVK AK  L LL+N E+NA+ KGLDV+ L I H   ++  K      RA GR  P+     ++E+
Sbjct:   27 PEQIAKAYAPEQRMSWKKSVEVARFIKGMTLKQAKAWLEDVVKLKRPIPIKTFKKKQAHHATPWEGWP--VAKWPVKVAKRYLQLLENLENNAKFKGLDVERLVIIHAAAHKGIKIPNIMPRAFGRATPFNEETVNVEI 163          
The following BLAST results are available for this feature:
BLAST of CB290699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL22_HYPBU6.168e-1638.0350S ribosomal protein L22P OS=Hyperthermus butylic... [more]
RL22_META31.052e-1534.6750S ribosomal protein L22P OS=Methanococcus aeolic... [more]
RL22_HALWD1.795e-1528.6750S ribosomal protein L22P OS=Haloquadratum walsby... [more]
RL22_SULAC3.061e-1533.0950S ribosomal protein L22P OS=Sulfolobus acidocald... [more]
RL22_CENSY3.998e-1536.4950S ribosomal protein L22P OS=Cenarchaeum symbiosu... [more]
RL22_THEAC6.820e-1533.5550S ribosomal protein L22P OS=Thermoplasma acidoph... [more]
RL22_HALMA1.519e-1432.6750S ribosomal protein L22P OS=Haloarcula marismort... [more]
RL22_CALMQ3.384e-1436.5050S ribosomal protein L22P OS=Caldivirga maquiling... [more]
RL22_UNCMA5.773e-1433.5550S ribosomal protein L22P OS=Uncultured methanoge... [more]
RL22_PYRCJ7.540e-1434.5350S ribosomal protein L22P OS=Pyrobaculum calidifo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01da08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290699 ID=CB290699; Name=CB290699; organism=Citrus sinensis; type=EST; length=785bp
GGAAAAACGCAACGCTGAGAAGAGCAGCAGCAGCAGCCATGGTGAAGTAT
TCGAAAGAGCCGGACAATCCCACCAAGTCATGCAAAGCTAGAGGCTCTGA
TCTCCGTGTTCACTTCAAGAACACTAGGGAGGCAGCCCATGCTCTTAGAA
AGCTGTCTTTGACCAAGGCTAAAAGGTACTTGGAGGATGTTATGGCTCAC
AAGCAAGCCATACCATTCACCCGCTTCTGTCGCGGTGTTGGGCGAACTGC
ACAGGCTAAAAACCGTAATCCAAATGGTCAAGGTCGCTGGCCGGTTAAAT
CTGCAAAGTTCATTCTGGATTTACTCAAGAATGCTGAGAGTAATGCAGAG
GTGAAAGGCTTAGATGTGGACGCGCTTTACATTTCTCACATCCAAGTGAA
TCAAGCCCAGAAGCAGAGGCGTCGGACTTATCGTGCACATGGAAGGATTA
ACCCATACATGTCTTCCCCATGTCATATTGAGTTGACACTCTCAGAAAAG
GAGGAACCTGTGAAGAAAGAGCCGGAGACCCAGTTGGCTTCCAGGAAACC
GAGGACAGCTACATAGTGGTGCCTTATCTTGAATGTTGGGAGTCCTGACT
TGATTTCTCTTTTTTCCCCCTTTGTACTACCATGACAACATACAATTTTG
TTTACAAGATACTTGTTCCTGAAGACTTCTGTTGGTTCAGTATTTAGTTT
TATTCTGTCTTGCCATGGCTCGCTTACCATGATAGTTCTCAGTGGAATTT
TGATGGTGGGTATGTTGAGGTTGACTTTGCCGCAA
back to top