CB290699

Overview
NameCB290699
Unique NameCB290699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METTP (50S ribosomal protein L22P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.847e-14
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            + YS  P+   +  +A G +L +  K+ RE   A+R + +  A+R+L+DV+A K+A+PF R+ R V              GR+P K+A+ +L +L+NA  NAE KGL+ + L I +    + +  R    RA GR  P       IE+ L+
Sbjct:    4 LNYSITPEG--RFARAMGVELPISPKHAREICRAIRGMKVEAAERFLQDVIALKRAVPFRRYNRNVPHRHGLVGWPA---GRFPQKAARAVLRVLENAIGNAEYKGLEKERLVIGYANTKKGRTFRGWMPRAMGRATPKNQETVSIEMILT 149          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_SULTO (50S ribosomal protein L22P OS=Sulfolobus tokodaii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 45/148 (30.41%), Postives = 75/148 (50.68%), Query Frame = 3
Query:   48 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            Y K   +  K  KA   ++    ++      A+R + L  AK++L +V+  K+A+PF +   G    +    +     GR+P K+ K++L +L+NAE+NA  KGLD++ + I HI  ++    +R   RA GR         HIE+ L
Sbjct:    6 YPKLDIDENKLAKAVIKNVPASIRDLYNVCKAIRGMKLNDAKQFLNNVLEEKEALPFWKHSHGASHRSNISPKWKVKSGRYPKKAIKYVLKVLENAENNANSKGLDLENVKIVHIAAHKGIILKRYMPRAFGRSTRKYRYTSHIEVIL 153          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_PICTO (50S ribosomal protein L22P OS=Picrophilus torridus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 44/141 (31.21%), Postives = 78/141 (55.32%), Query Frame = 3
Query:   69 PTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            P +S +AR  ++ +  K+    AH L+ + L  AK  L++V+  K  +P+ R+   V       +R   G GR+PVK+A+    LL++  +NAE KGL  D+L I HI V++ +  ++ T +A+GR   +     ++E+ +
Sbjct:   10 PERSARARIREIDISLKDAVNVAHFLKGMDLDSAKNVLDNVIEKKVPVPYFRYMDSV------SHRKGIGPGRYPVKAARAFKKLLEDVSANAEFKGLS-DSLEIVHIAVSKGRMIKKYTPKAYGRAGAFFKDLVNLEVVV 143          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_SULSO (50S ribosomal protein L22P OS=Sulfolobus solfataricus GN=rpl22p PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.194e-13
Identity = 48/149 (32.21%), Postives = 75/149 (50.34%), Query Frame = 3
Query:   45 KYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            KY +   +  K  KA   D+    ++      A+R + L  AK +L  V+  K+A+PF R+ +G    +    +     GR+P K+ + +L +L+NAE+NA  KGLDVD L I HI  ++    +R   RA GR         +IE+ L
Sbjct:    5 KYPQLDVDELKIAKAVIRDVPESIRDLYNVCKAIRGMYLNDAKDFLNRVLEEKEALPFWRYNKGASHKSNISAKWKIKAGRYPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKGITLQRYMPRAFGRATAKYRRTSNIEVIL 153          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_NITMS (50S ribosomal protein L22P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.865e-13
Identity = 48/146 (32.88%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   48 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            Y+ +  + T+  ++   +  +  K+ RE A A++ LS+ KA+ YL+ V+   +A+ F R+   VG  A     +    GR+P K+A+  + +L N ESNAE KG+D+D L I +  V++    +R   RA GR  P  +   H+EL
Sbjct:    6 YAFQNYDATRHVRSSVREKDMSHKHAREVAVAIKGLSIEKARDYLQAVVNKDRAVAFRRYKNQVGHKADPGMMS----GRYPQKTAREFIKVLDNLESNAEYKGMDLDRLKIVNATVHKGVIVKRFIPRAMGRATPKNNVLTHVEL 147          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METVS (50S ribosomal protein L22P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 50/148 (33.78%), Postives = 74/148 (50.00%), Query Frame = 3
Query:   48 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            Y  E D P+K+ KA G  LR+  K+  E    +  + L  A  +L  V+A +  +PF    + V      K +     GR+P K+ + IL +L NA+ NAE KGL+ + L I HI  N+    +R   RA GR +P      HI++ L
Sbjct:    6 YKVEAD-PSKTAKAMGRTLRISKKHALEICREINGMKLETAVSFLNRVLALETPVPFKVHNKDV---PHRKGKIGTHAGRFPQKATEEILKVLDNAKKNAEYKGLNTEKLRIKHISSNKGFIIKRFMPRAFGRASPKYQETIHIQVIL 149          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_AERPE (50S ribosomal protein L22P OS=Aeropyrum pernix GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 51/154 (33.12%), Postives = 79/154 (51.30%), Query Frame = 3
Query:   48 YSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ--------GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            YS +  + ++  KA   ++ VH K   E A A+  + + +A+RYL  V+  ++A+PF R        A  K  +  G         GR+PVK+A+++L LL N E+NA  K LDV+ L I H+  ++    +R   RA GR  P      HIE+
Sbjct:    6 YSVKLRDESEVAKAVLRNVPVHPKIMAEVARAISGMRVDEARRYLRAVIEKREAVPFRR--------AHGKQAHRRGLADKWGWPVGRYPVKAARYMLKLLDNVEANAANKNLDVERLKIIHVAAHKGITLKRWMPRAWGRATPRNRVHSHIEI 151          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METMP (50S ribosomal protein L22P OS=Methanococcus maripaludis GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 50/150 (33.33%), Postives = 75/150 (50.00%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            +KY  E D P  + +A G  LR+  K+  E    L  + L  A  YL  V+A +  +PF    + +      K +     GR+P K++  IL++L NA+ NAE KGL+ + L I HI  N+    +R   RA GR +P      HI++ L
Sbjct:    4 LKYKVEAD-PKNTARAMGRTLRISRKHAIELCRELSGMKLDAAVAYLNRVIALETPVPFKVHNKDL---PHRKGKIGTHSGRFPQKASLEILNVLDNAKKNAEQKGLNTEKLRIKHISSNRGFTIKRYMPRAFGRASPKNQETIHIQVIL 149          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METB6 (50S ribosomal protein L22P OS=Methanoregula boonei (strain 6A8) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-13
Identity = 47/139 (33.81%), Postives = 75/139 (53.96%), Query Frame = 3
Query:   84 KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQ---GRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            + + ++L +  K++ E A  +R   +  A  YL DV+A K+AIPF  F R V     A  R   G    GR+PVK++K  + +L++ + NAE  GLD + L I H   N+ + Q+    RA GR +P +    +IE+ +
Sbjct:   17 RGKANELSISPKHSIEIADFIRHQRVNDALAYLADVVALKKAIPFRHFNRNV-----AHKRGLPGNWDAGRYPVKASKAYIRILESIKKNAEYTGLDTENLEIIHASANRGRAQKAYFPRAMGRASPKVRETVNIEIVV 150          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METM7 (50S ribosomal protein L22P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            +KY  E D P  + +A G  LR+  K+  E    L  + L  A  YL  V+A +  +PF    + +      K +     GR+P K++  IL +L NA+ NAE KGL+ + L I HI  N+    +R   RA GR +P      HI++ L
Sbjct:    4 LKYKVEAD-PKNTARAMGRTLRISRKHAIELCRELSGMKLDAAVAYLNRVIALETPVPFKVHNKDL---PHRKGKIGTHSGRFPQKASLEILQVLDNAKKNAEQKGLNTEKLRIKHISSNRGFTIKRYMPRAFGRASPKNQETIHIQVIL 149          
The following BLAST results are available for this feature:
BLAST of CB290699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL22_METTP9.847e-1433.1150S ribosomal protein L22P OS=Methanosaeta thermop... [more]
RL22_SULTO1.680e-1330.4150S ribosomal protein L22P OS=Sulfolobus tokodaii ... [more]
RL22_PICTO1.680e-1331.2150S ribosomal protein L22P OS=Picrophilus torridus... [more]
RL22_SULSO2.194e-1332.2150S ribosomal protein L22P OS=Sulfolobus solfatari... [more]
RL22_NITMS2.865e-1332.8850S ribosomal protein L22P OS=Nitrosopumilus marit... [more]
RL22_METVS4.887e-1333.7850S ribosomal protein L22P OS=Methanococcus vannie... [more]
RL22_AERPE4.887e-1333.1250S ribosomal protein L22P OS=Aeropyrum pernix GN=... [more]
RL22_METMP8.336e-1333.3350S ribosomal protein L22P OS=Methanococcus maripa... [more]
RL22_METB68.336e-1333.8150S ribosomal protein L22P OS=Methanoregula boonei... [more]
RL22_METM71.089e-1233.3350S ribosomal protein L22P OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290699 ID=CB290699; Name=CB290699; organism=Citrus sinensis; type=EST; length=785bp
GGAAAAACGCAACGCTGAGAAGAGCAGCAGCAGCAGCCATGGTGAAGTAT
TCGAAAGAGCCGGACAATCCCACCAAGTCATGCAAAGCTAGAGGCTCTGA
TCTCCGTGTTCACTTCAAGAACACTAGGGAGGCAGCCCATGCTCTTAGAA
AGCTGTCTTTGACCAAGGCTAAAAGGTACTTGGAGGATGTTATGGCTCAC
AAGCAAGCCATACCATTCACCCGCTTCTGTCGCGGTGTTGGGCGAACTGC
ACAGGCTAAAAACCGTAATCCAAATGGTCAAGGTCGCTGGCCGGTTAAAT
CTGCAAAGTTCATTCTGGATTTACTCAAGAATGCTGAGAGTAATGCAGAG
GTGAAAGGCTTAGATGTGGACGCGCTTTACATTTCTCACATCCAAGTGAA
TCAAGCCCAGAAGCAGAGGCGTCGGACTTATCGTGCACATGGAAGGATTA
ACCCATACATGTCTTCCCCATGTCATATTGAGTTGACACTCTCAGAAAAG
GAGGAACCTGTGAAGAAAGAGCCGGAGACCCAGTTGGCTTCCAGGAAACC
GAGGACAGCTACATAGTGGTGCCTTATCTTGAATGTTGGGAGTCCTGACT
TGATTTCTCTTTTTTCCCCCTTTGTACTACCATGACAACATACAATTTTG
TTTACAAGATACTTGTTCCTGAAGACTTCTGTTGGTTCAGTATTTAGTTT
TATTCTGTCTTGCCATGGCTCGCTTACCATGATAGTTCTCAGTGGAATTT
TGATGGTGGGTATGTTGAGGTTGACTTTGCCGCAA
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