CB290699

Overview
NameCB290699
Unique NameCB290699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METM6 (50S ribosomal protein L22P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            +KY  E D P  + +A G  LR+  K+  E    L  + L  A  YL  V+A +  +PF    + +      K +     GR+P K++  IL +L NA+ NAE KGL+ + L I HI  N+    +R   RA GR +P      HI++ L
Sbjct:    4 LKYKVEAD-PKNTARAMGRTLRISRKHAIELCRELSGMKLDAAVAYLNRVIALETPVPFKVHNKDL---PHRKGKIGTHSGRFPQKASLEILQVLDNAKKNAEQKGLNTEKLRIKHISSNRGFTIKRYMPRAFGRASPKNQETIHIQVIL 149          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METM5 (50S ribosomal protein L22P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            +KY  E D P  + +A G  LR+  K+  E    L  + L  A  YL  V+A +  +PF    + +      K +     GR+P K++  IL +L NA+ NAE KGL+ + L I HI  N+    +R   RA GR +P      HI++ L
Sbjct:    4 LKYKVEAD-PKNTARAMGRTLRISRKHAIELCRELSGMKLDAAVAYLNRVIALETPVPFKVHNKDL---PHRKGKIGTHSGRFPQKASLEILQVLDNAKKNAEQKGLNTEKLRIKHISSNRGFTIKRYMPRAFGRASPKNQETIHIQVIL 149          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_HALSA (50S ribosomal protein L22P OS=Halobacterium salinarium GN=rpl22p PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.403e-12
Identity = 41/151 (27.15%), Postives = 79/151 (52.32%), Query Frame = 3
Query:   42 VKYSKEPDNPTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 494
            + YS + D+   S KA   +  +  K+++  A  +   ++  AK YL+ V+  ++++PF +   GVG        +    GR+P K++K  L LL N  +NA+ +G D D + I H+  ++  + + R  RA GR   + ++ C +E+ ++
Sbjct:    3 ISYSVDVDSEA-SAKAMLRERSISLKHSKAIAREISGETVADAKEYLQAVIDEERSVPFKQHNSGVGHRNDIDGWDA---GRYPEKASKDFLKLLSNVSNNADQQGFDADEMVIEHVAPHKVGESQGRKPRAMGRATTWNATLCDVEIVVT 149          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METS5 (50S ribosomal protein L22P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.217e-12
Identity = 39/126 (30.95%), Postives = 67/126 (53.17%), Query Frame = 3
Query:  108 VHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            V  K+      A+R +++ +A+ +L+ VM  K+A+P+ R+  G    +    +     GR+P K+ K++   L+NA +NA+ KGLD D L + HI  ++    +R   RA GR     +   HIE+
Sbjct:   26 VSIKDLYNVCKAIRGMNVKEAQAFLQRVMEEKEALPYWRYDHGASHKSNISRKWKVKSGRYPKKAIKYVNKALENALANAQGKGLDEDKLKVVHIAAHKGIIIKRFMPRAFGRATKKYNRTSHIEV 151          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_PYRAE (50S ribosomal protein L22P OS=Pyrobaculum aerophilum GN=rpl22p PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 43/139 (30.94%), Postives = 71/139 (51.08%), Query Frame = 3
Query:   69 PTKSCKARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            P +  +A   + R+ +K + E A  ++ ++L +AK +LEDV+  K+ +P   F +     A      P    +WPVK A+  L +L+N E+NA  +GLDVD + I H   ++  K      RA GR   +     ++EL
Sbjct:   28 PEQIARAYAPEQRMSWKKSVEVARFIKGMTLKQAKTWLEDVVKLKRPVPIKTFKKKQAHHATPWEGWP--VAKWPVKVARRFLQVLENLENNARFRGLDVDRVVIVHAAAHKGFKIPNIMPRAFGRATRFDEQTVNVEL 164          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METHJ (50S ribosomal protein L22P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.572e-11
Identity = 47/136 (34.56%), Postives = 68/136 (50.00%), Query Frame = 3
Query:   84 KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            + R ++  +  K+  E A  +R + L  A  YLE V+A ++ IPF RF R V      K       GR+P K+++  L LL N   NAE  GL+ D L I H+  N+  ++R    RA GR  P      +IEL +
Sbjct:   17 RGRVNEAPISPKHAIEIAGFIRGMKLDDAAAYLEGVVALQKPIPFKRFNRNV---PHRKGLVGWDAGRYPQKASRVYLRLLNNVRKNAEYNGLEGDQLRIVHVSANRGIRRRSFMPRAMGRATPKDRQTVNIELVV 149          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_THENV (50S ribosomal protein L22P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 42/134 (31.34%), Postives = 70/134 (52.24%), Query Frame = 3
Query:   84 KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            KA   + ++ +K + E A  +  ++L +AK +LEDV+  K+ IP   F +     A   +  P    +WPVK A+  LDLL+N E+NA  +GLDV+ + I H   ++  +      RA GR   +     ++E+
Sbjct:   33 KAYAPEQKMSWKKSVEVARFIEGMTLRQAKSWLEDVVKMKRPIPIRTFKKKQAHHATPWSGWP--VAKWPVKVARRFLDLLENLENNARFRGLDVERVVIVHAAAHKGYRIHNIMPRAFGRATRFDEQTVNVEV 164          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_PYRIL (50S ribosomal protein L22P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 42/134 (31.34%), Postives = 72/134 (53.73%), Query Frame = 3
Query:   84 KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 485
            +A   + ++ +K + E A  ++ ++L +AK +LEDV+  K+ IP   F +     A   +  P    +WPVK AK  LDLL+N E+NA+ +GLDV+ + I H   ++  +      RA GR   +     ++E+
Sbjct:   33 RAYAPEQKMSWKKSVEVARFIKGMTLRQAKSWLEDVVKMKRPIPIKTFKKKQAHHAVPWSGWP--VAKWPVKVAKRFLDLLENLENNAKFRGLDVERVVIVHAAAHKGYRIPNIMPRAFGRATRFDEQTVNVEV 164          
BLAST of CB290699 vs. ExPASy Swiss-Prot
Match: RL22_METLZ (50S ribosomal protein L22P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.053e-11
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 3
Query:   84 KARGSDLRVHFKNTREAAHALRKLSLTKAKRYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRN-PNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 491
            +A+ ++L    K+  E AH +R +    A  YLE V+  K+A+PF RF R V        +      GR+PVK+A   + L+++A+ NAE  GL  + + I H   N+ +  +    RA GR  P      ++E+ L
Sbjct:   17 RAKANELGCSPKHAVEIAHLVRNMMADDAVAYLEQVIDLKRAVPFHRFNRNVSHQKSLNGKTFGTAAGRYPVKAAAEYVRLIRSAQKNAEYAGLAPEKMVIIHAAANKGRCIKGIFPRAMGRATPKHKDSVNVEIIL 153          
The following BLAST results are available for this feature:
BLAST of CB290699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RL22_METM61.089e-1233.3350S ribosomal protein L22P OS=Methanococcus maripa... [more]
RL22_METM51.089e-1233.3350S ribosomal protein L22P OS=Methanococcus maripa... [more]
RL22_HALSA5.403e-1227.1550S ribosomal protein L22P OS=Halobacterium salina... [more]
RL22_METS59.217e-1230.9550S ribosomal protein L22P OS=Metallosphaera sedul... [more]
RL22_PYRAE1.572e-1130.9450S ribosomal protein L22P OS=Pyrobaculum aerophil... [more]
RL22_METHJ1.572e-1134.5650S ribosomal protein L22P OS=Methanospirillum hun... [more]
RL22_THENV2.053e-1131.3450S ribosomal protein L22P OS=Thermoproteus neutro... [more]
RL22_PYRIL2.053e-1131.3450S ribosomal protein L22P OS=Pyrobaculum islandic... [more]
RL22_METLZ2.053e-1131.3950S ribosomal protein L22P OS=Methanocorpusculum l... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01da08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290699 ID=CB290699; Name=CB290699; organism=Citrus sinensis; type=EST; length=785bp
GGAAAAACGCAACGCTGAGAAGAGCAGCAGCAGCAGCCATGGTGAAGTAT
TCGAAAGAGCCGGACAATCCCACCAAGTCATGCAAAGCTAGAGGCTCTGA
TCTCCGTGTTCACTTCAAGAACACTAGGGAGGCAGCCCATGCTCTTAGAA
AGCTGTCTTTGACCAAGGCTAAAAGGTACTTGGAGGATGTTATGGCTCAC
AAGCAAGCCATACCATTCACCCGCTTCTGTCGCGGTGTTGGGCGAACTGC
ACAGGCTAAAAACCGTAATCCAAATGGTCAAGGTCGCTGGCCGGTTAAAT
CTGCAAAGTTCATTCTGGATTTACTCAAGAATGCTGAGAGTAATGCAGAG
GTGAAAGGCTTAGATGTGGACGCGCTTTACATTTCTCACATCCAAGTGAA
TCAAGCCCAGAAGCAGAGGCGTCGGACTTATCGTGCACATGGAAGGATTA
ACCCATACATGTCTTCCCCATGTCATATTGAGTTGACACTCTCAGAAAAG
GAGGAACCTGTGAAGAAAGAGCCGGAGACCCAGTTGGCTTCCAGGAAACC
GAGGACAGCTACATAGTGGTGCCTTATCTTGAATGTTGGGAGTCCTGACT
TGATTTCTCTTTTTTCCCCCTTTGTACTACCATGACAACATACAATTTTG
TTTACAAGATACTTGTTCCTGAAGACTTCTGTTGGTTCAGTATTTAGTTT
TATTCTGTCTTGCCATGGCTCGCTTACCATGATAGTTCTCAGTGGAATTT
TGATGGTGGGTATGTTGAGGTTGACTTTGCCGCAA
back to top