CB290717

Overview
NameCB290717
Unique NameCB290717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:438..1172. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H3_DERIM (Histone H3, embryonic OS=Dermasterias imbricata PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.055e-55
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LRFQS AV+ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H3_ACRFO (Histone H3 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.055e-55
Identity = 109/115 (94.78%), Postives = 111/115 (96.52%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAA KSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AVLALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.055e-55
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.055e-55
Identity = 109/115 (94.78%), Postives = 111/115 (96.52%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H32_CRILO (Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.055e-55
Identity = 108/115 (93.91%), Postives = 111/115 (96.52%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTV LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVTLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H332_CAEEL (Histone H3.3 type 2 OS=Caenorhabditis elegans GN=his-72 PE=1 SV=3)

HSP 1 Score: 213.772 bits (543), Expect = 8.623e-55
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:   12 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2 
Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CB290717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
H3_DERIM5.055e-5593.91Histone H3, embryonic OS=Dermasterias imbricata PE... [more]
H3_ACRFO5.055e-5594.78Histone H3 OS=Acropora formosa PE=3 SV=2[more]
H33_TRIPS5.055e-5594.78Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3... [more]
H32_ENCAL5.055e-5594.78Histone H3.2 OS=Encephalartos altensteinii PE=1 SV... [more]
H32_CRILO5.055e-5593.91Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3[more]
H332_CAEEL8.623e-5593.91Histone H3.3 type 2 OS=Caenorhabditis elegans GN=h... [more]
H33_XENTR1.126e-5493.91Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1... [more]
H33_XENLA1.126e-5493.91Histone H3.3 OS=Xenopus laevis PE=1 SV=3[more]
H33_SPISO1.126e-5493.91Histone H3.3 OS=Spisula solidissima PE=1 SV=2[more]
H33_RAT1.126e-5493.91Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01db07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290717 ID=CB290717; Name=CB290717; organism=Citrus sinensis; type=EST; length=775bp
TTTTTTTTTTTTTTTTTGGGGAAGAAACATCAATATTTCTTTTTATTATT
CAACAAAAACATTGAATCCATTTCATAAAACAAAAATAAATAACAAACTA
AACTTAGATTAGAAGCAAAATAATAGAGATGTTCAACACCACCACTATTG
TGGCAACAGGGATCCAAAAGAACACATAAAAGCCAGTCTCTTATGGGGAA
TTAAAATCCCCATCATCAACAAATAGACATTATAAAACACCACCAAAAAC
AAACCCAGATGATGACAAAAGCCATATTCTAATAACTACTGGAATCCTAC
CCCTATCTACCCCCACCAACCCCCACGTACAAATTAACACATTACAACTT
CCCCCTTCCCTTCCAGTCATTCAATTGAAGCAAGCAGCAATTACGCTTAA
GCACGCTCGCCACGGATCCTACGGGCAAGCTGTATGTCCTTGGGCATAAT
AGTGACACGCTTTGCATGAATGGCGCAAAGGTTAGTGTCCTCGAAGAGAC
CAACAAGGGAAGCCTCCGCTGCCTCCTGCAGGGCCAGTACTGCATGGCTC
TGGAAACGCAGATCAGTCTTAAAGTCCTGAGCAATTTCACGAACAAGTCT
CTGGAATGGGAGTTTCCTGATAAGCAGCTCGGTACTCTTCTGGTACTTGC
GAATTTCTCGAAGGGCGACGGTTCCAGGACGGTAACGATGAGGCTTCTTA
ACACCACCGGTGGTGGGCGCAGACTTACGGGCGGCCTTGGTAGCAAGTTG
CTTCCTAGGAGCCTTTCCTCCGGTT
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