CB290717 | Citrus Genome Database

Overview


Name	CB290717
Unique Name	CB290717
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	775

Libraries


Library Name	Type
Washington Navel orange cold acclimated flavedo & albedo cDNA library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1030	contig	Csv1_Contig1030:438..1172.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_PIG (Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_MOUSE (Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_HUMAN (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_DROME (Histone H3.3 OS=Drosophila melanogaster GN=His3.3A PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_DROHY (Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_DANRE (Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_CHICK (Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H33_BOVIN (Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.126e-54
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

[Close]

BLAST of CB290717 vs. ExPASy Swiss-Prot
Match: H3_VOLCA (Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.509e-54
Identity = 110/115 (95.65%), Postives = 111/115 (96.52%), Query Frame = -2

Query:  430 TGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEASLVGLFEDTNLCAIHAKRVTIMPKDIQ 774
            TGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AVLALQEAAEA LVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:   12 TGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 125

The following BLAST results are available for this feature:

BLAST of CB290717 vs. ExPASy Swiss-Prot

BLAST of CB290717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192


Match Name	E-value	Identity	Description
H33_RABIT	1.126e-54	93.91	Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=...	[more]
H33_PIG	1.126e-54	93.91	Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3	[more]
H33_MOUSE	1.126e-54	93.91	Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2	[more]
H33_HUMAN	1.126e-54	93.91	Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2	[more]
H33_DROME	1.126e-54	93.91	Histone H3.3 OS=Drosophila melanogaster GN=His3.3A...	[more]
H33_DROHY	1.126e-54	93.91	Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 S...	[more]
H33_DANRE	1.126e-54	93.91	Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3	[more]
H33_CHICK	1.126e-54	93.91	Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2	[more]
H33_BOVIN	1.126e-54	93.91	Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3	[more]
H3_VOLCA	2.509e-54	95.65	Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2	[more]

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Properties


Property Name	Value
Genbank description	UCRCS01_01db07_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB290717 ID=CB290717; Name=CB290717; organism=Citrus sinensis; type=EST; length=775bp
TTTTTTTTTTTTTTTTTGGGGAAGAAACATCAATATTTCTTTTTATTATT
CAACAAAAACATTGAATCCATTTCATAAAACAAAAATAAATAACAAACTA
AACTTAGATTAGAAGCAAAATAATAGAGATGTTCAACACCACCACTATTG
TGGCAACAGGGATCCAAAAGAACACATAAAAGCCAGTCTCTTATGGGGAA
TTAAAATCCCCATCATCAACAAATAGACATTATAAAACACCACCAAAAAC
AAACCCAGATGATGACAAAAGCCATATTCTAATAACTACTGGAATCCTAC
CCCTATCTACCCCCACCAACCCCCACGTACAAATTAACACATTACAACTT
CCCCCTTCCCTTCCAGTCATTCAATTGAAGCAAGCAGCAATTACGCTTAA
GCACGCTCGCCACGGATCCTACGGGCAAGCTGTATGTCCTTGGGCATAAT
AGTGACACGCTTTGCATGAATGGCGCAAAGGTTAGTGTCCTCGAAGAGAC
CAACAAGGGAAGCCTCCGCTGCCTCCTGCAGGGCCAGTACTGCATGGCTC
TGGAAACGCAGATCAGTCTTAAAGTCCTGAGCAATTTCACGAACAAGTCT
CTGGAATGGGAGTTTCCTGATAAGCAGCTCGGTACTCTTCTGGTACTTGC
GAATTTCTCGAAGGGCGACGGTTCCAGGACGGTAACGATGAGGCTTCTTA
ACACCACCGGTGGTGGGCGCAGACTTACGGGCGGCCTTGGTAGCAAGTTG
CTTCCTAGGAGCCTTTCCTCCGGTT