CB290721

Overview
NameCB290721
Unique NameCB290721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK_MUSAC (S-adenosylmethionine synthetase OS=Musa acuminata GN=METK PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.399e-54
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = -3
Query:  425 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 787
            KDPTKVDRSGA + RQAAKSIVA+ LARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPG++TINL LKRGG  R+LKTAAYGHFGRDDPDFTWEVVKPL+ EKP A
Sbjct:  274 KDPTKVDRSGAYVARQAAKSIVASELARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGLITINLGLKRGGY-RYLKTAAYGHFGRDDPDFTWEVVKPLELEKPAA 393          
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK2_HORVU (S-adenosylmethionine synthetase 2 OS=Hordeum vulgare GN=SAM2 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.399e-54
Identity = 102/121 (84.30%), Postives = 114/121 (94.21%), Query Frame = -3
Query:  425 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 787
            KDPTKVDRSGA I RQAAKSI+A+GLARRCIVQ+SYAIGVPEPLSVFVDSYGTGKIPD+EILK+VKE+FDFRPGM++INLDLK+GG  RF+KTAAYGHFGRDD DFTWEVVKPLK++K  A
Sbjct:  275 KDPTKVDRSGAYIARQAAKSIIASGLARRCIVQISYAIGVPEPLSVFVDSYGTGKIPDREILKLVKENFDFRPGMISINLDLKKGGK-RFIKTAAYGHFGRDDADFTWEVVKPLKFDKASA 394          
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK_MESCR (S-adenosylmethionine synthetase OS=Mesembryanthemum crystallinum GN=METK PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.280e-53
Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = -3
Query:  428 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 787
            KDPTKVDRSGA I RQAAKSIVA GLARRCIVQ+SYAIGV EPLSVFVD+YGTGKI DK+ILKIVKE+FDFRPGM+  NLDL RGGN R+LKTAAYGHFGRDD DFTWEVVKPLKWEKPQ
Sbjct:  273 KDPTKVDRSGAYIARQAAKSIVAAGLARRCIVQISYAIGVAEPLSVFVDTYGTGKISDKDILKIVKETFDFRPGMIANNLDLLRGGN-RYLKTAAYGHFGRDDADFTWEVVKPLKWEKPQ 391          
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK4_BRAJU (S-adenosylmethionine synthetase 4 OS=Brassica juncea GN=MSAMS4 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.724e-53
Identity = 100/115 (86.96%), Postives = 107/115 (93.04%), Query Frame = -3
Query:  443 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 787
            KDPTKVDRSGA IVRQAAKS+VA GLARRCIVQVSYAIGVPEPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEV+KPLK
Sbjct:  273 KDPTKVDRSGAYIVRQAAKSVVATGLARRCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVIKPLK 387          
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK3_ARATH (S-adenosylmethionine synthetase 3 OS=Arabidopsis thaliana GN=METK3 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.864e-53
Identity = 101/115 (87.83%), Postives = 107/115 (93.04%), Query Frame = -3
Query:  443 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 787
            KDPTKVDRSGA IVRQAAKS+VA GLARRCIVQVSYAIGVPEPLSVFVD+Y TG IPDK+IL ++KE+FDFRPGMM INLDLKRGGN RF KTAAYGHFGRDDPDFTWEVVKPLK
Sbjct:  273 KDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFVDTYKTGTIPDKDILVLIKEAFDFRPGMMAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWEVVKPLK 387          
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK1_PICSI (S-adenosylmethionine synthetase 1 OS=Picea sitchensis GN=METK1 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.415e-52
Identity = 101/120 (84.17%), Postives = 110/120 (91.67%), Query Frame = -3
Query:  434 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTG--KIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 787
            KDPTKVDRSGA IVRQAAKS+VA GLARRC+VQVSYAIGVPEPLSVFVD+YGTG  KI D EILK++KE+FDFRPGM++INLDLKRGGN RF KTAAYGHFGR+DPDFTWE VK LKWEK
Sbjct:  273 KDPTKVDRSGAYIVRQAAKSVVAAGLARRCLVQVSYAIGVPEPLSVFVDTYGTGTGKIQDAEILKLIKENFDFRPGMISINLDLKRGGNMRFQKTAAYGHFGREDPDFTWETVKVLKWEK 392          
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK1_VITVI (S-adenosylmethionine synthetase 1 OS=Vitis vinifera GN=METK1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.153e-52
Identity = 99/118 (83.90%), Postives = 110/118 (93.22%), Query Frame = -3
Query:  434 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 787
            KDPTKVDRSGA IVRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++K++FDFRPGM++INLDLKRGGN RF KTAAYGHFGRDDPDF+WE VK LK EK
Sbjct:  273 KDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKKNFDFRPGMISINLDLKRGGNFRFQKTAAYGHFGRDDPDFSWETVKQLKPEK 390          
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK3_VITVI (S-adenosylmethionine synthetase 3 OS=Vitis vinifera GN=METK3 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.024e-52
Identity = 98/115 (85.22%), Postives = 107/115 (93.04%), Query Frame = -3
Query:  443 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 787
            KDPTKVDRSGA IVRQAAKS+VA+GLARRC+VQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++KE+FDFRPGM+ INLDLKRGGN RF KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  273 KDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILDLIKENFDFRPGMIAINLDLKRGGNFRFQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK4_POPTR (S-adenosylmethionine synthetase 4 OS=Populus trichocarpa GN=METK4 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.669e-51
Identity = 96/115 (83.48%), Postives = 107/115 (93.04%), Query Frame = -3
Query:  443 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 787
            KDPTKVDRSGA IVRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPD++IL+++KE+FDFRPGM+ INLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  273 KDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDRDILELIKENFDFRPGMIAINLDLMRGGNSRYQKTAAYGHFGRDDPDFTWETVKLLK 387          
BLAST of CB290721 vs. ExPASy Swiss-Prot
Match: METK2_ACTCH (S-adenosylmethionine synthetase 2 OS=Actinidia chinensis GN=SAM2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.033e-50
Identity = 95/115 (82.61%), Postives = 105/115 (91.30%), Query Frame = -3
Query:  443 KDPTKVDRSGASIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLK 787
            KDPTKVDRSGA +VRQAAKS+VA+GLARRCIVQVSYAIGVPEPLSVFVD+Y TGKIPDK+IL ++KE+FDFRPGM+ INLDLKRGGN R+ KTAAYGHFGRDD D TWE VK LK
Sbjct:  273 KDPTKVDRSGAYVVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAAYGHFGRDDADLTWETVKILK 387          
The following BLAST results are available for this feature:
BLAST of CB290721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_MUSAC4.399e-5486.78S-adenosylmethionine synthetase OS=Musa acuminata ... [more]
METK2_HORVU4.399e-5484.30S-adenosylmethionine synthetase 2 OS=Hordeum vulga... [more]
METK_MESCR1.280e-5386.67S-adenosylmethionine synthetase OS=Mesembryanthemu... [more]
METK4_BRAJU3.724e-5386.96S-adenosylmethionine synthetase 4 OS=Brassica junc... [more]
METK3_ARATH4.864e-5387.83S-adenosylmethionine synthetase 3 OS=Arabidopsis t... [more]
METK1_PICSI1.415e-5284.17S-adenosylmethionine synthetase 1 OS=Picea sitchen... [more]
METK1_VITVI3.153e-5283.90S-adenosylmethionine synthetase 1 OS=Vitis vinifer... [more]
METK3_VITVI7.024e-5285.22S-adenosylmethionine synthetase 3 OS=Vitis vinifer... [more]
METK4_POPTR2.669e-5183.48S-adenosylmethionine synthetase 4 OS=Populus trich... [more]
METK2_ACTCH5.033e-5082.61S-adenosylmethionine synthetase 2 OS=Actinidia chi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01db09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290721 ID=CB290721; Name=CB290721; organism=Citrus sinensis; type=EST; length=789bp
TTTTTTTTTTTTTTTTTAGGCAAACCGCACACACATAGACGTTATATTAA
TAAGCAAAACAACTATTGGGCTTTAGCCAAAGCTACAAATTAATACAACT
CGCGTGCTGCCTTCATTCTACATTCCAAAAATAGTCGTAAGCAAAAGGAA
GAATTTTACTAATTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATC
ACTACACAACAGTGGTGACATGGTACATTAAACCAAAACCAAAAAAGAAG
TGGGGAAAGAAGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTC
TGAACACAGGAGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATT
CAAATTATTCATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAG
TTTTCACTTTTCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGG
GCTTCACAACTTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCA
TAGGCAGCAGTCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAA
ATTGATGGTCATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATTT
TGAGGATCTCCTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAAA
ACAGACAATGGCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGCA
CCTGCGAGCAAGCCCGTTTGCAACAATGCTCTTAGCAGCCTGCCTAACAA
TGGATGCACCACTCCTATCCACCTTAGTAGGGTCTTTTC
back to top