CB290722

Overview
NameCB290722
Unique NameCB290722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_BORPD (S-adenosylmethionine synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metK PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 8.857e-58
Identity = 121/238 (50.84%), Postives = 155/238 (65.13%), Query Frame = 2
Query:   98 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI---GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            FLFTSESV+EGHPDK+ DQISDA+LDA   QDP ++VA ET   T +V++ GEITT A VDY ++ RDT R IG+ + D G+D   C VLV  ++QSPDIAQGV     ++ ED    GAGDQG MFGYA DETP+ MP     A +L  R +E+RK+    WLRPD K+QVT  Y +      PV V TV++STQH   ++   I   + E +IKP  PE  +  +T F +NP+GRF
Sbjct:    6 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV----DRKSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PVEVDTVVLSTQHAPEISQSAIHEAVIEDIIKPSFPEGLITPRTKFLVNPTGRF 235          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_PROM2 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9215) GN=metK PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.157e-57
Identity = 125/253 (49.41%), Postives = 169/253 (66.80%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDV-GLDADHCKVLVNIEQQSPDIAQGVHGHFTKR---PEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHD---ETVTNDE-----IAADLKEHVIKPVIPEKYLDE---KTIFHLNPSGRF 802
            M  F+FTSESV EGHPDK+CDQISDAVLDA L +DPES+VACET   T + ++ GEIT+KAKVDY K+VR+  + IG+      G DA+ C VLV +++QSPDI+QGV+          ++ GAGDQG MFGYA DETPE MPL   LA +L  +L +VR  +  ++L PDGKTQV+++Y       +PV ++T+LISTQH+   + +TN+E     I  DL +HV+ P   +  +     KT F +NP+G+F
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACETVVNTGLCLLTGEITSKAKVDYIKLVRNVIKEIGYEGYKAGGFDANSCAVLVALDEQSPDISQGVNEADDVNDDLEDNTGAGDQGIMFGYACDETPELMPLPISLAHRLAIQLAKVRHENLLNYLLPDGKTQVSIDYEKG----LPVSINTILISTQHNPEIDGLTNEEEIRQRIKEDLWKHVVIPATEDLEIKPNIIKTRFLVNPTGKF 249          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_HAEIE (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain PittEE) GN=metK PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.157e-57
Identity = 120/238 (50.42%), Postives = 158/238 (66.39%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            M ++LFTSESV+EGHPDK+ DQISDAVLD  L+QDP+++VACET  KT M +V GEITT A VD E + R     IG+   ++G D   C VL  I +QS DI QGV     + P D GAGDQG MFGYAT+ET   MP +   A +L  +  EVRK+   +WLRPD K+QVT++ Y DN     V V  V++STQH E V+  ++   + E +IKPV+P ++L ++T F +NP+GRF
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRKVICDIGYEHSEMGFDGHSCAVLNAIGKQSADINQGVD---RENPLDQGAGDQGIMFGYATNETDVLMPAAITYAHRLMEKQAEVRKSGKLAWLRPDAKSQVTLK-YEDNKI---VGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPTEWLSKETKFFINPTGRF 231          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_HAEI8 (S-adenosylmethionine synthetase OS=Haemophilus influenzae (strain 86-028NP) GN=metK PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.157e-57
Identity = 120/238 (50.42%), Postives = 158/238 (66.39%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            M ++LFTSESV+EGHPDK+ DQISDAVLD  L+QDP+++VACET  KT M +V GEITT A VD E + R     IG+   ++G D   C VL  I +QS DI QGV     + P D GAGDQG MFGYAT+ET   MP +   A +L  +  EVRK+   +WLRPD K+QVT++ Y DN     V V  V++STQH E V+  ++   + E +IKPV+P ++L ++T F +NP+GRF
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRKVICDIGYEHSEMGFDGHSCAVLNAIGKQSADINQGVD---RENPLDQGAGDQGIMFGYATNETDVLMPAAITYAHRLMEKQAEVRKSGKLAWLRPDAKSQVTLK-YEDNKI---VGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPTEWLSKETKFFINPTGRF 231          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_CHRSD (S-adenosylmethionine synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metK PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.157e-57
Identity = 119/237 (50.21%), Postives = 154/237 (64.98%), Query Frame = 2
Query:   92 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            E  LFTSESV+EGHPDK+ DQISDAVLDA + +D +++VACET  KT + +V GEITT A VD E +VR     IG+ S DVG D + C VL  I +QS DIAQGV      +PED GAGDQG MFGYAT+ET  +MP     + +L  R  E+RK+    WLRPD K+Q+T  Y   +    P  V  V++STQHD  +  DE+   +K  +I+ VIP ++L E T +H+NP+G F
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIARDKQARVACETMVKTGVAIVAGEITTSAWVDLEDLVRRVINDIGYTSSDVGFDGNTCGVLNLIGKQSVDIAQGVD---RSKPEDQGAGDQGLMFGYATNETDSYMPAPIHYSHRLVERQAELRKHGLLPWLRPDAKSQLTFRY---DAQGKPCAVDAVVLSTQHDPDIDQDELREMVKREIIEEVIPAEWLTETTKYHINPTGNF 233          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_BAUCH (S-adenosylmethionine synthetase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=metK PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.157e-57
Identity = 122/238 (51.26%), Postives = 157/238 (65.97%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            M   LFTSESV+EGHPDK+ DQISD VLDA L QD +++VACET  KT MV+V GEITT A +D E++ R+T R IG+ + ++  DA+ C VL  I +QSPDI +G++      P + GAGDQG MFGYAT+ET   MP     A +L AR + VRKN T  WL PD K+QVT  Y  D G +  V + TV+ STQH E +T   +   + E +IKPV+P + L E T F +NP+GRF
Sbjct:    1 MAKHLFTSESVSEGHPDKIADQISDTVLDAILAQDLKARVACETYVKTGMVLVGGEITTNAWIDIEELTRNTIRDIGYTNSEMKFDANSCAVLSIISKQSPDINKGIN---NIDPREQGAGDQGFMFGYATNETDVLMPAPITYAHRLVARQSLVRKNGTLPWLCPDAKSQVTFAY--DEGKV--VGIDTVVFSTQHVENITLPNLKEAVMEEIIKPVLPIELLSEHTKFFINPTGRF 231          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_PROMS (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain AS9601) GN=metK PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.511e-57
Identity = 124/253 (49.01%), Postives = 171/253 (67.59%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDV-GLDADHCKVLVNIEQQSPDIAQGVHGHFTKR---PEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHD---ETVTNDE-----IAADLKEHVIKPVIPEKYLD---EKTIFHLNPSGRF 802
            M  F+FTSESV EGHPDK+CDQISDAVLDA L +DPES+VACET   T + ++ GEIT+KAKVDY K+VR+  + IG+      G DA+ C VLV +++QSPDI+QGV+          ++ GAGDQG MFGYA DETPE MPL   LA +L  +L++VR  +  ++L PDGKTQV+++Y N     VP+ ++T+LISTQH+   + +TN+E     I  DL ++V+ P   +  +    + T F +NP+G+F
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACETVVNTGLCLLTGEITSKAKVDYIKLVRNVIKEIGYEGYRAGGFDANSCAVLVALDEQSPDISQGVNEADDVNDDLEDNTGAGDQGIMFGYACDETPELMPLPISLAHRLAIQLSKVRHENMLNYLLPDGKTQVSIDYKNG----VPLSINTILISTQHNPEIDGITNEEEIRQRIKEDLWKNVVLPATEDLEIKPNIQTTRFLVNPTGKF 249          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_PROM9 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9312) GN=metK PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.511e-57
Identity = 125/253 (49.41%), Postives = 167/253 (66.01%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDV-GLDADHCKVLVNIEQQSPDIAQGVH---GHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHD---ETVTNDE-----IAADLKEHVIKPVIPEKYLD---EKTIFHLNPSGRF 802
            M  F+FTSESV EGHPDK+CDQISDAVLDA L +DPES+VACET   T + ++ GEIT+KAKVDY K+VR+  + IG+      G DA+ C VLV +++QSPDI+QGV+          ++ GAGDQG MFGYA DETPE MPL   LA +L  +L +VR     ++L PDGKTQV+++Y       +PV ++T+LISTQH+   + +TN+E     I  DL  HV+ P   +  +     KT F +NP+G+F
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACETVVNTGLCLLTGEITSKAKVDYIKLVRNVIKEIGYEGYRAGGFDANSCAVLVALDEQSPDISQGVNYADDVNDDLEDNTGAGDQGIMFGYACDETPELMPLPISLAHRLAIQLAKVRHEEVLNYLLPDGKTQVSIDYEKG----LPVSINTILISTQHNPEIDGITNEEEIRQRIKEDLWTHVVIPATEDLKIKPNISKTRFLVNPTGKF 249          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_HAEDU (S-adenosylmethionine synthetase OS=Haemophilus ducreyi GN=metK PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.511e-57
Identity = 120/242 (49.59%), Postives = 155/242 (64.05%), Query Frame = 2
Query:   77 QLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            +L+ M   LFTSESV+EGHPDK+ DQISDAVLD  L+QDP+++VACET  KT M +V GEITT A VD E + R     IG+   D+G DA  C VL  I +QSPDI QGV     + P   GAGDQG MFGYAT+ET   MP     A +L  R  EVRK+   +WLRPD K+Q+T  Y N+      + +  V++STQH E V   E+   + E +IKP +P K+L++ T + +NP+GRF
Sbjct:    2 RLNSMAINLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVIYDIGYSHSDMGFDAHSCAVLNAIGKQSPDINQGVD---REDPLAQGAGDQGIMFGYATNETDVLMPAPITYAHRLMQRQAEVRKSGKLAWLRPDAKSQLTFAYENNQ----IIGIDAVVLSTQHAEEVKQKELIEGVMEEIIKPTLPSKWLNQHTKYFINPTGRF 236          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_MYXXD (S-adenosylmethionine synthetase OS=Myxococcus xanthus (strain DK 1622) GN=metK PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.973e-57
Identity = 117/235 (49.79%), Postives = 153/235 (65.11%), Query Frame = 2
Query:   98 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            FLFTSESV EGHPDK+ DQISD VLDA + +DP+++VA ET  KT + +V GE+TT   VD  K+VR T   IG+    +G D + C V+V IE QS DIA+GV        +D GAGDQG MFG+A DETPE MP     A  +  RL +VR+     W+RPDGK+QVTVEY +      P R+  V++STQH + V+N +I   ++E VI   +P+K +D KT F +NP+GRF
Sbjct:    5 FLFTSESVTEGHPDKIADQISDGVLDAIIAKDPQARVAVETLVKTGLAIVAGEVTTNCYVDIPKLVRSTICRIGYTDSSMGYDGNTCGVMVAIEGQSQDIARGV-----DNKKDQGAGDQGMMFGFACDETPELMPAPIHYAHAITRRLADVRRKQH-PWIRPDGKSQVTVEYRDGR----PARIDAVVVSTQHSDEVSNKKIQEAIREDVIAKALPKKLIDNKTKFFINPTGRF 229          
The following BLAST results are available for this feature:
BLAST of CB290722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BORPD8.857e-5850.84S-adenosylmethionine synthetase OS=Bordetella petr... [more]
METK_PROM21.157e-5749.41S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_HAEIE1.157e-5750.42S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_HAEI81.157e-5750.42S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_CHRSD1.157e-5750.21S-adenosylmethionine synthetase OS=Chromohalobacte... [more]
METK_BAUCH1.157e-5751.26S-adenosylmethionine synthetase OS=Baumannia cicad... [more]
METK_PROMS1.511e-5749.01S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROM91.511e-5749.41S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_HAEDU1.511e-5749.59S-adenosylmethionine synthetase OS=Haemophilus duc... [more]
METK_MYXXD1.973e-5749.79S-adenosylmethionine synthetase OS=Myxococcus xant... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01db09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290722 ID=CB290722; Name=CB290722; organism=Citrus sinensis; type=EST; length=804bp
GCACTAGGTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAG
ATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTT
CTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGA
CCAGATCTCTGATGCGGTGCTTGATGCCTGCCTTGAGCAGGATCCTGAGA
GCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTT
GGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGA
CACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGATGCCG
ATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCTGATATTGCC
CAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGG
TGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCCCTGAATTTA
TGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAG
GTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCA
GGTCACTGTTGAGTACTACAATGACAATGGTGCCATGGTCCCAGTCCGTG
TCCACACGGTCCTCATTTCAACCCAGCATGATGAGACTGTCACAAATGAT
GAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAGCCTGTCATCCCCGA
GAAGTACCTTGATGAGAAGACCATCTTCCACCTTAATCCATCAGGTCGTT
TTGT
back to top