CB290722

Overview
NameCB290722
Unique NameCB290722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_PASMU (S-adenosylmethionine synthetase OS=Pasteurella multocida GN=metK PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.498e-57
Identity = 117/238 (49.16%), Postives = 156/238 (65.55%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            M  +LFTSESV+EGHPDK+ DQISDAVLD  L+QDP+++VACET  KT M +V GEITT A VD E + R     IG+   D+G D   C VL  I +QS DI QGV     + P D GAGDQG MFGYAT+ET   MP +   A +L  R  +VRK  T  WLRPD K+QVT++Y +       V V  V++STQH ++++  ++   + E +IKPV+P ++L ++T + +NP+GRF
Sbjct:    1 MSRYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYKHSDMGFDGHSCAVLNAIGKQSSDINQGVD---RENPLDQGAGDQGIMFGYATNETEVLMPAAITYAHRLMERQAKVRKEGTLPWLRPDAKSQVTLKYEDHK----IVGVDAVVLSTQHCDSISQHDLHEAVMEEIIKPVLPAEWLSKETKYFINPTGRF 231          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_PSYWF (S-adenosylmethionine synthetase OS=Psychrobacter sp. (strain PRwf-1) GN=metK PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.793e-57
Identity = 113/234 (48.29%), Postives = 155/234 (66.24%), Query Frame = 2
Query:  101 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            LFTSESV+EGHPDK+ DQISDA+LDA + +D  ++VACET  KT  V++ GEI+T A +D E+IVRDT  SIG+   D+G D + C V+  I +QSP+IAQGV       PED GAGDQG MFGYA++ET   MP     A +L  R +E+R++    WLRPD K QVT++Y N      P  +  V++STQHD  ++  ++   + E++IK V+P   L   T +H+NP+G+F
Sbjct:    6 LFTSESVSEGHPDKMADQISDALLDAIMREDLHARVACETLVKTGAVVLAGEISTTANIDIERIVRDTVNSIGYNHSDLGFDGETCAVINMIGKQSPEIAQGVD---RMNPEDQGAGDQGLMFGYASNETEVLMPAPIEFAHRLMERQSELRRSGELKWLRPDAKAQVTLKYTNG----TPSAIDAVVLSTQHDPDISQADLQEAVMENIIKHVLPADLLHAGTRYHINPTGKF 232          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_PROMP (S-adenosylmethionine synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=metK PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.793e-57
Identity = 125/254 (49.21%), Postives = 167/254 (65.75%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDV-GLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHD---ETVTNDE-----IAADLKEHVIKPVIPE---KYLDEKTIFHLNPSGRF 802
            M  F+FTSESV EGHPDK+CDQISDAVLDA L +DPES+VACET   T + ++ GEIT++AK+DY K+VR   + IG+      G D++ C VLV +++QSPDI+QGV+       ED+    GAGDQG MFGYA DETPE MPL   LA +L  +L +VR      +L PDGKTQV+++Y       VPV ++T+LISTQH    + +TN+E     I  DL  +V+ P   +   K  ++KT F +NP+G+F
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLSEDPESRVACETVVNTGLCLLTGEITSRAKLDYIKLVRKVIKEIGYEGSKAGGFDSNSCAVLVALDEQSPDISQGVN-EADDINEDLENNTGAGDQGIMFGYACDETPELMPLPISLAHRLAIQLAKVRHEKVLDYLLPDGKTQVSIDYKKG----VPVSINTILISTQHTAEIDGITNEEEIRQKIKEDLWINVVLPATEDLEIKPSNQKTRFLVNPTGKF 249          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_PROM5 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9515) GN=metK PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.793e-57
Identity = 125/254 (49.21%), Postives = 166/254 (65.35%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDV-GLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPVIPE---KYLDEKTIFHLNPSGRF 802
            M  F+FTSESV EGHPDK+CDQISDAVLDA L++DPES+VACET   T + ++ GEIT++AK+DY K+VR   + IG+      G D++ C VLV +++QSPDI+QGV+       ED+    GAGDQG MFGYA DETPE MPL   LA +L  +L +VR  +   +L PDGKTQV+++Y       VPV ++T+LISTQH        +E     +I  DL  +V+ PV  +   K   EKT F +NP+G+F
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLKEDPESRVACETVVNTGLCLLTGEITSRAKLDYIKLVRKVIKEIGYEGAKAGGFDSNSCAVLVALDEQSPDISQGVN-EADDLNEDLENNTGAGDQGIMFGYACDETPELMPLPISLAHRLARQLAKVRHENVLEYLLPDGKTQVSIDYKKG----VPVSINTILISTQHRAEIDGIINEKEIRQKITDDLWINVVLPVTEDLEIKPSKEKTRFLVNPTGKF 249          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_HAES2 (S-adenosylmethionine synthetase OS=Haemophilus somnus (strain 2336) GN=metK PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.793e-57
Identity = 117/238 (49.16%), Postives = 153/238 (64.29%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            M ++LFTSESV+EGHPDK+ DQISDAVLD  L QDP+++VACET  KT M +V GEITT A VD E + R     IG+   D+G D   C VL  I +QS DI QGV     + P D GAGDQG MFGYAT+ET   MP +   A +L  R  +VRK     WLRPD K+QVT++ Y DN     V +  V++STQH + V    +   + E +IKP++P ++L ++T + +NP+GRF
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILRQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYKHSDIGFDGHSCAVLNAIGKQSSDINQGVD---RESPLDQGAGDQGIMFGYATNETDVLMPAAITYAHRLMERQAQVRKKGILDWLRPDAKSQVTLK-YEDNRI---VGIDAVVLSTQHSDNVDQKTVHEGVMEEIIKPILPAEWLSKETKYFINPTGRF 231          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_HAES1 (S-adenosylmethionine synthetase OS=Haemophilus somnus (strain 129Pt) GN=metK PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.793e-57
Identity = 117/238 (49.16%), Postives = 153/238 (64.29%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            M ++LFTSESV+EGHPDK+ DQISDAVLD  L QDP+++VACET  KT M +V GEITT A VD E + R     IG+   D+G D   C VL  I +QS DI QGV     + P D GAGDQG MFGYAT+ET   MP +   A +L  R  +VRK     WLRPD K+QVT++ Y DN     V +  V++STQH + V    +   + E +IKP++P ++L ++T + +NP+GRF
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILRQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRQVICDIGYKHSDIGFDGHSCAVLNAIGKQSSDINQGVD---RESPLDQGAGDQGIMFGYATNETDVLMPAAITYAHRLMERQAQVRKKGILDWLRPDAKSQVTLK-YEDNRI---VGIDAVVLSTQHSDNVDQKTVHEGVMEEIIKPILPAEWLSKETKYFINPTGRF 231          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_SYNJA (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain JA-3-3Ab) GN=metK PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.279e-56
Identity = 124/250 (49.60%), Postives = 156/250 (62.40%), Query Frame = 2
Query:  101 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPED------IGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPVIPEKYL--DEKTIFHLNPSGRF 802
            +F+SESV EGHPDK+CDQISDA++DA L  DP S+VA E    T MV++ GEIT++A V++ ++VRD    IG+     G  A+ C VLV  ++QSPDIAQGV+     R         IGAGDQG MFG+A DETPE MPL   LA +L  +L  VRKN T  +LRPDGKTQVTV Y        PV +HT+LISTQH        +E    + I ADL E V++PV  E  +  D  T F  NP+G+F
Sbjct:    1 MFSSESVTEGHPDKICDQISDAIVDALLTADPLSRVAAEVVVNTGMVILTGEITSQAHVNFTRLVRDKVAEIGYTDAKNGFSAESCAVLVAFDEQSPDIAQGVNLALESRTSQEDEFDLIGAGDQGLMFGFACDETPELMPLPISLAHRLSRQLAAVRKNGTLPYLRPDGKTQVTVAYEEGR----PVGIHTLLISTQHTPTIGAITEEAAVQERIRADLWEAVVQPVFAELPIKPDGNTRFLTNPTGKF 246          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_PSYCK (S-adenosylmethionine synthetase OS=Psychrobacter cryohalolentis (strain K5) GN=metK PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.279e-56
Identity = 113/234 (48.29%), Postives = 155/234 (66.24%), Query Frame = 2
Query:  101 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            LFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VACET  KT  V++ GEITT A +D E+IVRDT   IG+   D+G D + C V+  + +QSP+IAQGV       PE+ GAGDQG MFGYA++ET   MP     A +L  R +E+R+     WLRPD K QVT++Y  +     PV +  V++STQHD +++  ++   + E +IK V+P + L   T +H+NP+G+F
Sbjct:    6 LFTSESVSEGHPDKMADQISDAILDAILRQDLHARVACETLVKTGAVVLAGEITTTANIDVERIVRDTVNGIGYHHSDLGFDGETCAVINMLGKQSPEIAQGVD---RADPEEQGAGDQGLMFGYASNETEVLMPAPIEYAHRLMERQSELRRAGELPWLRPDAKAQVTLKYDGNK----PVAIDAVVLSTQHDPSISQADLQEAIMESIIKQVLPAELLHAGTRYHINPTGKF 232          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_MYXXA (S-adenosylmethionine synthetase OS=Myxococcus xanthus GN=metK PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.279e-56
Identity = 116/234 (49.57%), Postives = 152/234 (64.96%), Query Frame = 2
Query:   98 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGR 799
            FLFTSESV EGHPDK+ DQISD VLDA + +DP+++VA ET  KT + +V GE+TT   VD  K+VR T   IG+    +G D + C V+V IE QS DIA+GV        +D GAGDQG MFG+A DETPE MP     A  +  RL +VR+     W+RPDGK+QVTVEY +      P R+  V++STQH + V+N +I   ++E VI   +P+K +D KT F +NP+GR
Sbjct:    5 FLFTSESVTEGHPDKIADQISDGVLDAIIAKDPQARVAVETLVKTGLAIVAGEVTTNCYVDIPKLVRSTICRIGYTDSSMGYDGNTCGVMVAIEGQSQDIARGV-----DNKKDQGAGDQGMMFGFACDETPELMPAPIHYAHAITRRLADVRRKQH-PWIRPDGKSQVTVEYRDGR----PARIDAVVVSTQHSDEVSNKKIQEAIREDVIANALPKKLIDNKTKFFINPTGR 228          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_DESVM (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metK PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.670e-56
Identity = 116/235 (49.36%), Postives = 151/235 (64.26%), Query Frame = 2
Query:   98 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            + FTSESV EGHPDK+ DQISDAVLD  L QDP S+VACET   T M  + GEI TK   D  ++VR T R+IG+ S ++G D   C V+ +I++QS DIAQGV       PED GAGDQG MFG+A DETP  MP     A +L  RLT+VRK+    +LRPDGKTQV+ EY +      PV ++ V++S+QH + V+ND I   + E VI+  +PE  + +     +N +GRF
Sbjct:    8 YFFTSESVTEGHPDKVADQISDAVLDVLLAQDPMSRVACETLVTTGMAFIAGEIRTKGFADLPEVVRSTIRNIGYNSSEMGFDWKTCAVISSIDKQSGDIAQGVD---RGNPEDQGAGDQGMMFGFACDETPTLMPAPIYWAHQLSQRLTQVRKDGILDFLRPDGKTQVSFEYVDGK----PVHINNVVVSSQHADNVSNDTIREGIIEEVIRKTLPEGLMADDCEIFINTTGRF 235          
The following BLAST results are available for this feature:
BLAST of CB290722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_PASMU7.498e-5749.16S-adenosylmethionine synthetase OS=Pasteurella mul... [more]
METK_PSYWF9.793e-5748.29S-adenosylmethionine synthetase OS=Psychrobacter s... [more]
METK_PROMP9.793e-5749.21S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_PROM59.793e-5749.21S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_HAES29.793e-5749.16S-adenosylmethionine synthetase OS=Haemophilus som... [more]
METK_HAES19.793e-5749.16S-adenosylmethionine synthetase OS=Haemophilus som... [more]
METK_SYNJA1.279e-5649.60S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_PSYCK1.279e-5648.29S-adenosylmethionine synthetase OS=Psychrobacter c... [more]
METK_MYXXA1.279e-5649.57S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_DESVM1.670e-5649.36S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01db09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290722 ID=CB290722; Name=CB290722; organism=Citrus sinensis; type=EST; length=804bp
GCACTAGGTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAG
ATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTT
CTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGA
CCAGATCTCTGATGCGGTGCTTGATGCCTGCCTTGAGCAGGATCCTGAGA
GCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTT
GGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGA
CACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGATGCCG
ATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCTGATATTGCC
CAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGG
TGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCCCTGAATTTA
TGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAG
GTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCA
GGTCACTGTTGAGTACTACAATGACAATGGTGCCATGGTCCCAGTCCGTG
TCCACACGGTCCTCATTTCAACCCAGCATGATGAGACTGTCACAAATGAT
GAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAGCCTGTCATCCCCGA
GAAGTACCTTGATGAGAAGACCATCTTCCACCTTAATCCATCAGGTCGTT
TTGT
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