CB290722

Overview
NameCB290722
Unique NameCB290722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:160..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_POLSJ (S-adenosylmethionine synthetase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.347e-56
Identity = 121/241 (50.21%), Postives = 163/241 (67.63%), Query Frame = 2
Query:   98 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH--DETVTNDEIAAD----LKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            FLFTSESV+EGHPDK+ DQISDA+LDA  +QDP S+VA ET T T +V++ GEITT A VDY ++ RDT + IG+ + + G+D   C VLV  ++QS DIAQGV  H +    +IGAGDQG MFGYA DETPE MP     A +L  R  ++RK+    +LRPD K+QVT+ Y N      P  + TV++STQH  D++ T  ++ A     + E +IKPV+P+++L E T + +NP+GRF
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFKQDPRSRVAAETLTNTGLVVLAGEITTNAHVDYIQVARDTIKRIGYDNTEYGIDYKGCAVLVAYDKQSNDIAQGV-DHASDDHLNIGAGDQGLMFGYACDETPELMPAPIYYAHRLMERQAQLRKDGRLPFLRPDAKSQVTMRYVNGK----PHSIDTVVLSTQHSPDQSETPHKMKASFTEAIIEEIIKPVLPKEWLKE-TKYLINPTGRF 239          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_THEFY (S-adenosylmethionine synthetase OS=Thermobifida fusca (strain YX) GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.290e-56
Identity = 124/247 (50.20%), Postives = 154/247 (62.35%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI-------GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPEKYLD-EKTIFHLNPSGRF 802
            M   LFTSESV EGHPDK+ DQISDA+LD+ L  DP S+VA ET   T +V V GE+TT   VD   I+R+    IG+ S   G D   C V V+I  QSPDIAQGV   +  R E+I       GAGDQG MFGYA +ETPE MPL   LA  L  RL EVR++ T  +LRPDGKTQVTVEY  +     PVR+ TV++S+QH   +   E +  D+KEHV+ PV+    L+ +     +NP+GRF
Sbjct:    1 MSRRLFTSESVTEGHPDKIADQISDAILDSMLRDDPHSRVAVETLITTGLVHVAGEVTTSTYVDIPTIIREKILEIGYDSSAKGFDGASCGVSVSIGGQSPDIAQGVDNAYEAREEEIFDDLDRQGAGDQGLMFGYANNETPELMPLPITLAHALSQRLAEVRRDGTIPYLRPDGKTQVTVEYDGNR----PVRLDTVVVSSQHAPDIDLRELLTPDIKEHVVDPVVARYNLEADNYRLLVNPTGRF 243          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_RALSO (S-adenosylmethionine synthetase OS=Ralstonia solanacearum GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.290e-56
Identity = 119/238 (50.00%), Postives = 156/238 (65.55%), Query Frame = 2
Query:   98 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI---GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            FLFTSESV+EGHPDK+ DQISDA+LDA L QD  ++VA ET   T +V++ GEITT A VDY  + R+T + IG+ + D G+D   C VLV  ++QSPDIAQGV     +  +D    GAGDQG MFGYA DETPE MP     A +L  R +++R++    WLRPD K+QVTV Y N      P  V TV++STQH   ++ ++I   + E +IKPV+P   L E T + +NP+GRF
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAILAQDKYARVAAETLCNTGLVVLAGEITTSANVDYIHVARETIKRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV----DRASDDYLNQGAGDQGLMFGYACDETPELMPFPIYYAHRLVERQSQLRRDGRLPWLRPDAKSQVTVRYVNGK----PHSVDTVVLSTQHAPEISQEQIREAVIEEIIKPVLPSHMLAE-TKYLVNPTGRF 233          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_MARMS (S-adenosylmethionine synthetase OS=Marinomonas sp. (strain MWYL1) GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.290e-56
Identity = 116/237 (48.95%), Postives = 156/237 (65.82%), Query Frame = 2
Query:   92 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            E  LFTSESV+EGHPDK+ DQ+SDA+LDA L +DPE++VACET  KT MV+V GE+ T A VD E+I R   R IG+ S D+G D + C V+  I +QS DIA GV         + GAGDQG MFG+AT+ET   MP     A +L  R  EVRKN T  +LRPD K+QVT   Y++NG   P  +  V++STQH  +V   ++   + E +IKPV+P ++L ++T + +NP+G+F
Sbjct:    3 EYSLFTSESVSEGHPDKIADQVSDAILDAILAEDPEARVACETLVKTGMVLVAGEVRTNAWVDIEEIARGVIREIGYNSSDMGFDWESCAVMNAIGKQSADIAVGVD---EAGEHEQGAGDQGLMFGFATNETDVLMPAPITYAHRLVQRQAEVRKNGTLDFLRPDAKSQVTFR-YDENGK--PCAIDAVVLSTQHSASVKQADLREAVMEEIIKPVLPAEWLSKETKYFINPTGQF 233          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_DICNV (S-adenosylmethionine synthetase OS=Dichelobacter nodosus (strain VCS1703A) GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.290e-56
Identity = 115/238 (48.32%), Postives = 154/238 (64.71%), Query Frame = 2
Query:   89 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            M  +LFTSESV+EGHPDK+ DQISDAVLDA LE+D +++VACET  KT MV++ GEI T   VD E +VR T  +IG+   ++G D   C VL  I +QS DIAQGV     K     GAGDQG MFGYA  ETP  MP     A +L  +  ++R +    WLRPD K+Q+T   Y DN     V V  +++STQH E ++  E+   ++E +I P++P K++D+KT FH+NP+G+F
Sbjct:    1 MTEYLFTSESVSEGHPDKIADQISDAVLDAILEKDLKARVACETLVKTGMVVIAGEIGTSTWVDLEDLVRKTICTIGYTHSEMGFDGRTCAVLNAIGKQSGDIAQGVDRGEAKLQ---GAGDQGLMFGYACTETPTLMPAPITYAHRLVEKQAQLRHSGALPWLRPDAKSQITFR-YRDN---TIVGVDAIVLSTQHSEEISLKELTEAVREEIIAPIVPSKWIDKKTRFHINPTGKF 231          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_CLAM3 (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.290e-56
Identity = 121/248 (48.79%), Postives = 156/248 (62.90%), Query Frame = 2
Query:  101 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--------GAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEK-----YLDEK-TIFHLNPSGRF 802
            LFTSESV EGHPDK+CDQISD++LDA L QDP S+ A ET   T +V V GE+TT   VD  +IVRD  R IG+ S +VG D  +C V V+I  QSPDIAQGV   +  R            GAGDQG MFGYA+ +TP FMPL   LA +L  RL  VR +   ++LRPDGKTQVT+ Y      +VP  V TV++STQH   V+ +++  +++EHVI+PV+         LD +     +NP+G+F
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLTQDPTSRAAVETLVTTGLVHVAGEVTTSGYVDIPQIVRDRIRDIGYDSSEVGFDGSNCGVTVSIGAQSPDIAQGVDRSYESRSGSASTDAHDLQGAGDQGLMFGYASRDTPVFMPLPIYLAHRLAERLAAVRHSGELAYLRPDGKTQVTIGY----EGLVPRTVDTVVLSTQHGPQVSQEDLRREVEEHVIRPVLAAAAEIGIELDSRDATLLINPTGKF 249          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_BIFAA (S-adenosylmethionine synthetase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.290e-56
Identity = 124/250 (49.60%), Postives = 154/250 (61.60%), Query Frame = 2
Query:   92 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV---------HGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLD----EKTIFHLNPSGRF 802
            E  L ++ESV EGHPDK+CDQISDA+LD  L QDP S VA ETC       VFGE+T++   D + IVR   R+IG+ S  VGLDAD C V V++ +QSP+I QGV              +R E  GAGDQG MFGYA DET   MPL   LA +L  RL EVRK+     LRPDGKTQVT+EY +D+    PVR+ TVL+STQHD  V    +   L EHVI+PV+ +   D    ++    +NP+G F
Sbjct:    3 ELKLISAESVTEGHPDKVCDQISDAILDDMLAQDPHSHVAVETCATVGQFFVFGEVTSEGYSDIQNIVRSVVRNIGYTSSRVGLDADSCGVTVSLTEQSPEINQGVARLSGEEESKASREQRYEAQGAGDQGVMFGYACDETDVLMPLPIHLAHRLAYRLAEVRKSGEVPHLRPDGKTQVTIEYDDDDH---PVRLDTVLVSTQHDPEVDQAWLKEQLTEHVIRPVLDDVLADRVAHDEYRVLVNPTGSF 249          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_COXBN (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metK PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.083e-55
Identity = 112/236 (47.46%), Postives = 150/236 (63.56%), Query Frame = 2
Query:   95 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            T LFTSESV+EGHPDK+ DQISDAVLDA + QDP  +VACE   K+ MV V GEITT A  D E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +++GAGDQG MFGYA+ ET  FMP     A +L  +   +RKN    WLRPD K+QVT+ Y N      PV    +++STQH   ++ + +   + + +IKP++P  +LD+ T F +NP+GRF
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALISQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELGAGDQGLMFGYASRETDVFMPAPITYAHRLVRQQALLRKNGRLPWLRPDAKSQVTLRYENGK----PVAADCIVLSTQHSPEISQESLREAVIDEIIKPIMPPHWLDKHTRFLVNPTGRF 232          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_DEIRA (S-adenosylmethionine synthetase OS=Deinococcus radiodurans GN=metK PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.414e-55
Identity = 121/247 (48.99%), Postives = 159/247 (64.37%), Query Frame = 2
Query:  104 FTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK-AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGV-HGHFTK--------RPED----IGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            +TSESV+EGHPDKL D ISD++LD  L Q+P S+VA ET   T M +V GE+    A VD +K VR+  + +G+   + G DA++  VLV I +QSP+IA GV H    +        +PE+    +GAGDQG MFGYATDETPE MPL   LA  L  RL E+RK+ T  +LRPD K QVTV    +  +     V T++ISTQH + VT ++I AD+ EHVI  VIP + L+E+T + +NPSGRF
Sbjct:   10 YTSESVSEGHPDKLSDFISDSILDEFLRQEPTSRVAVETLVTTGMAVVAGEVRAHTAHVDIQKTVREAVQRVGYTRANYGFDAEYSAVLVAIHEQSPEIASGVDHSEEWREMSEAERQKPENAYSMVGAGDQGLMFGYATDETPELMPLPISLAHGLTRRLAELRKDGTLPYLRPDAKAQVTVVRNGEPHSATETAVDTIVISTQHSDDVTQEQIRADMLEHVIPAVIPAELLNEQTRYFINPSGRF 256          
BLAST of CB290722 vs. ExPASy Swiss-Prot
Match: METK_PSEMY (S-adenosylmethionine synthetase OS=Pseudomonas mendocina (strain ymp) GN=metK PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.847e-55
Identity = 115/237 (48.52%), Postives = 157/237 (66.24%), Query Frame = 2
Query:   92 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 802
            E  LFTSESV+EGHPDK+ DQISDAVLDA + QD  ++VA ET  KT + +V GE+TT A VD E+IVRD   +IG+ S DVG D + C ++  I +QSPDI QGV      +PED GAGDQG MFGYA++ET   MP   VL+ +L  R  E RK+    WLRPD K+QVT  Y  +NG +  V +  V++STQH+  ++  ++   + E ++K  +P + L + T +H+NP+G+F
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIVQDKHARVAVETLVKTGVAIVAGEVTTSAWVDLEQIVRDVICNIGYTSSDVGFDGNTCGIINIIGKQSPDINQGVD---RAKPEDQGAGDQGLMFGYASNETDVLMPAPIVLSHRLVERQAEARKSGLLPWLRPDAKSQVTCRY--ENGKV--VGIDAVVLSTQHNPEISQADLQEAVMELIVKHTLPAELLHKDTQYHINPTGKF 232          
The following BLAST results are available for this feature:
BLAST of CB290722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_POLSJ6.347e-5650.21S-adenosylmethionine synthetase OS=Polaromonas sp.... [more]
METK_THEFY8.290e-5650.20S-adenosylmethionine synthetase OS=Thermobifida fu... [more]
METK_RALSO8.290e-5650.00S-adenosylmethionine synthetase OS=Ralstonia solan... [more]
METK_MARMS8.290e-5648.95S-adenosylmethionine synthetase OS=Marinomonas sp.... [more]
METK_DICNV8.290e-5648.32S-adenosylmethionine synthetase OS=Dichelobacter n... [more]
METK_CLAM38.290e-5648.79S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_BIFAA8.290e-5649.60S-adenosylmethionine synthetase OS=Bifidobacterium... [more]
METK_COXBN1.083e-5547.46S-adenosylmethionine synthetase OS=Coxiella burnet... [more]
METK_DEIRA1.414e-5548.99S-adenosylmethionine synthetase OS=Deinococcus rad... [more]
METK_PSEMY1.847e-5548.52S-adenosylmethionine synthetase OS=Pseudomonas men... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01db09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290722 ID=CB290722; Name=CB290722; organism=Citrus sinensis; type=EST; length=804bp
GCACTAGGTCCGCTTTGCTATTGAGGTCTGGTCTTAAGTCTGAATCTTAG
ATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGATGGAGACCTTT
CTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGACAAGTTGTGCGA
CCAGATCTCTGATGCGGTGCTTGATGCCTGCCTTGAGCAGGATCCTGAGA
GCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGGTCATGGTCTTT
GGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAGATTGTTCGCGA
CACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGGTCTTGATGCCG
ATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCCCTGATATTGCC
CAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGACATTGGTGCTGG
TGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGACCCCTGAATTTA
TGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTCGTCTCACGGAG
GTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGATGGGAAGACCCA
GGTCACTGTTGAGTACTACAATGACAATGGTGCCATGGTCCCAGTCCGTG
TCCACACGGTCCTCATTTCAACCCAGCATGATGAGACTGTCACAAATGAT
GAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAGCCTGTCATCCCCGA
GAAGTACCTTGATGAGAAGACCATCTTCCACCTTAATCCATCAGGTCGTT
TTGT
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