CB290735

Overview
NameCB290735
Unique NameCB290735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.529e-55
Identity = 122/165 (73.94%), Postives = 123/165 (74.55%), Query Frame = -2
Query:  335 MSSAFSGDETAPXXXXXXXXXXXXFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 829
            M S FSGDETAP            FSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:    1 MPSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165          
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.529e-55
Identity = 122/163 (74.85%), Postives = 123/163 (75.46%), Query Frame = -2
Query:  335 SAFSGDETAPXXXXXXXXXXXXFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 823
            S FSGDETAP            FSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:    2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.690e-54
Identity = 120/163 (73.62%), Postives = 122/163 (74.85%), Query Frame = -2
Query:  335 SAFSGDETAPXXXXXXXXXXXXFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 823
            S F+GDETAP            FSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:    2 SNFAGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.259e-33
Identity = 81/109 (74.31%), Postives = 81/109 (74.31%), Query Frame = -2
Query:  335 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 661
            VPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 109          
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL_PLECA (V-type proton ATPase 16 kDa proteolipid subunit OS=Pleurochrysis carterae GN=VAP PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.051e-32
Identity = 84/152 (55.26%), Postives = 99/152 (65.13%), Query Frame = -2
Query:  356 TAPXXXXXXXXXXXXFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI-NPKA--KSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 802
            TAP            F+ +GAAYGTAKSGVGV+SMGVM+P+LVMKSI+PVVMAGVLGIYGLIIAVII  G+  P+     Y  F G+                G+AIGIVGDAGVRA+AQQ KL+VGM           LYGLIVG+IL+S+
Sbjct:    8 TAPFFGFMGAAVALIFANLGAAYGTAKSGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVIIGNGVKGPEGGKPQYSSFTGFAHLAAGLACGLSGMAAGIAIGIVGDAGVRASAQQAKLYVGMVLILIFAEALGLYGLIVGLILTSK 159          
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.223e-30
Identity = 69/133 (51.88%), Postives = 89/133 (66.92%), Query Frame = -2
Query:  356 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 754
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.903e-30
Identity = 67/134 (50.00%), Postives = 93/134 (69.40%), Query Frame = -2
Query:  353 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRA 754
            +C+GA+YGTAKSGVG+A+MGV+RP+L++K+IVPV+MAG++GIYGL+++V+IS  +      Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV ++++S+A
Sbjct:   24 TCLGASYGTAKSGVGIAAMGVLRPDLIVKNIVPVIMAGIIGIYGLVVSVLISDALT--QDHYALYTGFIQLGAGLAVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLMNSKA 155          
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL_MANSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.903e-30
Identity = 69/133 (51.88%), Postives = 89/133 (66.92%), Query Frame = -2
Query:  356 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 754
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV I L ++
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.467e-30
Identity = 76/158 (48.10%), Postives = 95/158 (60.13%), Query Frame = -2
Query:  356 MSSAFSGDETAPXXXXXXXXXXXXFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 829
            MS A SG E A             FS +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV +ILS++
Sbjct:    1 MSEAKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of CB290735 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.441e-29
Identity = 75/158 (47.47%), Postives = 95/158 (60.13%), Query Frame = -2
Query:  356 MSSAFSGDETAPXXXXXXXXXXXXFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSR 829
            MS A +G E A             FS +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                G AIGIVGDAGVR  AQQP+LFVGM           LYGLIV +ILS++
Sbjct:    1 MSEAKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
The following BLAST results are available for this feature:
BLAST of CB290735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_TOBAC1.529e-5573.94V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL1_ARATH1.529e-5574.85V-type proton ATPase 16 kDa proteolipid subunit c1... [more]
VATL_SOLLC1.690e-5473.62V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE1.259e-3374.31V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_PLECA4.051e-3255.26V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI2.223e-3051.88V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEUCR2.903e-3050.00V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MANSE2.903e-3051.88V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SHEEP6.467e-3048.10V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN1.441e-2947.47V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290735 ID=CB290735; Name=CB290735; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTAGACATAACCACACAATCAATTCGTGCACAGAA
ATTTGTAAACCCCAAAAGCCAACAAATAACACAAACCATAATGTGTAAGG
ATGGTTCTTTCATACGTCTGATTTCACAGTAAAAATACAACAATACATGT
CGAGAACTCAAGCATTATTTTAAGGGGAAAATCTTGCCCTTAATGGTACA
GGCAGAATGGAGCTACTTAATAATCTAGTGGGATATTGACAAACACCTCA
ACATTTCACATGGTGTCCTAGCATCATCTAAGTGAGCATGACCAAATAAT
TTTGAGAAACCTCTGTTCTGAACCACGCATCCTAATCTGCTCTGGATTGG
CCAGCTCGGGAAGAAAGAATAATGCCAACAATGAGACCATACAACGCCAA
TGCCTCAGCAAAAATGAGAATGAGAATCATTCCAACAAAAAGCTTTGGTT
GCTGTGCATTAGCTCTGACACCAGCATCACCAACGATGCCAATAGCCATA
CCAGCAGAGAGACCAGCGAGGCCGCAAGCGAGACCCGAAGACAAATGAGC
GTAGCCATCGAATAGATAATATGATTTGGCCTTTGGGTTAATGCCAGTAC
TAATAATAACAGCAATAATTAAACCATAAATACCTAACACTCCCGCCATC
ACAACTGGCACAATCGATTTCATTACAAGCTCTGGCCTCATCACTCCCAT
CGATGCTACGCCCACTCCACTCTTCGCCGTCCCATACGCCGCTCCCATGC
AGGAGAAAACAAGGGCAGCAGCGGCGCCGAGGAACCCGAAAAAAGGCGCC
GTTTCATCGCCACTGAATGCGGATGACATTTCAATTCCTCCTAAA
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