CB290736

Overview
NameCB290736
Unique NameCB290736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5818 contig Csv1_Contig5818:37..809. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = 1
Query:   61 MSSAFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 534
            MS + SG E A              S +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:    1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDIS---LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 74/160 (46.25%), Postives = 92/160 (57.50%), Query Frame = 1
Query:   61 MSSAFSGDET--APXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 534
            MSS  S D     P             S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  +   +K Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:    1 MSSEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSK-YSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159          
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL_AEDAE (V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 68/133 (51.13%), Postives = 86/133 (64.66%), Query Frame = 1
Query:  136 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 534
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++   K Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTK-YSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 157          
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL_ASCSU (V-type proton ATPase 16 kDa proteolipid subunit OS=Ascaris suum GN=12 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.731e-29
Identity = 63/130 (48.46%), Postives = 84/130 (64.62%), Query Frame = 1
Query:  142 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 531
            +GAAYGTAKS VG++SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   31 LGAAYGTAKSAVGISSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLRGKVTSASAGYTLDKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.179e-29
Identity = 68/133 (51.13%), Postives = 85/133 (63.91%), Query Frame = 1
Query:  136 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 534
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N   +   LF  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   25 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154          
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL2_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis elegans GN=vha-2 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.179e-29
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  142 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 531
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL2_CAEBR (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis briggsae GN=vha-2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.179e-29
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  142 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 531
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVQAASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL_NEPNO (V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.070e-29
Identity = 67/133 (50.38%), Postives = 87/133 (65.41%), Query Frame = 1
Query:  136 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 534
            S +GAAYGTAKSGVG+++M VMRPEL+MK I+PVVMAG++ IYGL++AV+I+ G   +A +Y L+ G+                  AIGIVGDAGVR  AQQP+L+VGM            YGLIV I L ++
Sbjct:   25 SALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIA-GKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVAIFLYTK 156          
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 1
Query:  136 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 534
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of CB290736 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.377e-28
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 1
Query:  136 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 534
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
The following BLAST results are available for this feature:
BLAST of CB290736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_HUMAN2.124e-2945.57V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_DROME2.124e-2946.25V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AEDAE2.124e-2951.13V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ASCSU4.731e-2948.46V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TORMA6.179e-2951.13V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_CAEEL6.179e-2948.46V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL2_CAEBR6.179e-2948.46V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL_NEPNO8.070e-2950.38V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_RAT1.377e-2851.13V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE1.377e-2851.13V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290736 ID=CB290736; Name=CB290736; organism=Citrus sinensis; type=EST; length=773bp
GCACTAGGCAAAATTCTCAAATTCCTGTAAACCGATCGGTTCTTTTTAGG
AGGAATTGAAATGTCATCCGCATTCAGTGGCGATGAAACGGCGCCTTTTT
TCGGCTTCCTCGGCGCCGCTGCTGCCCTTGTTTTCTCCTGCATGGGAGCG
GCGTATGGGACGGCGAAGAGTGGAGTGGGCGTAGCATCGATGGGAGTGAT
GAGGCCAGAGCTTGTAATGAAATCGATTGTGCCAGTTGTGATGGCGGGAG
TGTTAGGTATTTATGGTTTAATTATTGCTGTTATTATTAGTACTGGCATT
AACCCAAAGGCCAAATCATATTATCTATTCGATGGCTACGCTCATTTGTC
TTCGGGTCTCGCTTGCGGCCTCGCTGGTCTCTCTGCTGGTATGGCTATTG
GCATCGTTGGTGATGCTGGTGTCAGAGCTAATGCACAGCAACCAAAGCTT
TTTGTTGGAATGATTCTCATTCTCATTTTTGCTGAGGCATTGGCGTTGTA
TGGTCTCATTGTTGGCATTATTCTCTCTTCCCGAGCTGGCCAATCCAGAG
CAGATTAGGATGCGTGGTTCAGAACAGAGGTTTCTCAAAATTATTTGGTC
ATGCTCACTTAGATGATGCTAGGACACCATGTGAAATGTTGAGGTGTTTG
TCAATATCCCACTAGATTATTAAGTAGCTCCATTCTGCCTGTACCATTAA
GGGCAAGATTTTCCCCTTAAAATAATGCTTGAGTTCTCGACATGTATTGT
TGTATTTTTACTGTGAAATCAGA
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