CB290737

Overview
NameCB290737
Unique NameCB290737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.058e-14
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = -1
Query:  460 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR 864
            K+ + L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF ++++HPNV   G++C+ IL              ++W+P   +            +PN + P   D A++W+
Sbjct:   10 KETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.058e-14
Identity = 41/151 (27.15%), Postives = 74/151 (49.01%), Query Frame = -1
Query:  412 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 864
            K+L DL ++P    SAG V + +++ W  SI+GP D+ Y GG F   + FP +YP  PP + FT++++HPN+  +G +C+ IL              ++W+P  T+              N + P   + A  ++  + +++       +K
Sbjct:    9 KELSDLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKK 145          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.058e-14
Identity = 41/140 (29.29%), Postives = 71/140 (50.71%), Query Frame = -1
Query:  445 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDE 864
            K+++ L ++P  G  A    E N+  + +++ GP  + YEGG F+  +  PD YP+ PP VRF ++++HPNV   G++C+S L              + W+P   +            +PN + P + D AK W+E + +
Sbjct:    9 KEIETLTRDPPPGIVAAPT-EDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTL-------------KKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQ 134          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.993e-14
Identity = 39/131 (29.77%), Postives = 65/131 (49.62%), Query Frame = -1
Query:  433 FSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKK 825
            FS G  + +N++EW+  I GP  T YEGG FN  + FP +YP  PP   F + ++HPN+  +G +C++IL              ++WTP   VE            PN + P   +  + ++  + +F ++
Sbjct:   27 FSIGQ-NSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNIL-------------KDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQR 143          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.993e-14
Identity = 37/114 (32.46%), Postives = 60/114 (52.63%), Query Frame = -1
Query:  475 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDA 813
            + D++N+F+W+  I GP +T YEGG F    + P+ YP+ PP VRF ++++HPNV +  G++C+ IL                W+P  T++            P  +SP N D+
Sbjct:   28 ICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDIL-------------KNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDS 128          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.216e-14
Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = -1
Query:  475 DESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDA 807
            DES+++ W   I GPPDT YE G F   ++ P NYP+ PPT++F ++++HPN+ +  G++C+ +L                W+ ++T++            P  +SP N DA
Sbjct:   26 DESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLL-------------KTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDA 124          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.216e-14
Identity = 41/142 (28.87%), Postives = 72/142 (50.70%), Query Frame = -1
Query:  439 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFK 864
            K+LK+L ++P    SAG   E ++F W  +I+GP ++ Y GG F   + FP +YP  PP V F ++++HPN+  +G +C+ IL              ++W+P  T+             PN + P   + A  ++  K +++
Sbjct:    8 KELKELQRDPPVSCSAGPTGE-DMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDIL-------------KDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYE 135          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 42/138 (30.43%), Postives = 68/138 (49.28%), Query Frame = -1
Query:  451 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERK 864
            K+ + L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF ++++HPNV   G++C+ IL              ++W+P   +            +PN + P   D A++W+  +
Sbjct:   10 KETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNE 133          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 40/140 (28.57%), Postives = 72/140 (51.43%), Query Frame = -1
Query:  445 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDE 864
            K+ + L + PV G +A + DE+N   + V + GP D+ +EGG F   +  P++YP+S P VRF ++++HPN+   G++C+ +L              ++W+P   +            +PN + P   D A+ W+  + E
Sbjct:   10 KETQRLMQEPVPGINA-IPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVL-------------KDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAE 135          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 40/140 (28.57%), Postives = 69/140 (49.29%), Query Frame = -1
Query:  445 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDE 864
            K+ + L   P  G SA    E N+  ++V I+GP  + YEGG F   +  P+ YP++ P VRF ++++HPN+   G++C+ IL              ++W+P   +            +PN + P + + AK W+  + E
Sbjct:   12 KETQRLLSEPAPGISAS-PSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAE 137          
The following BLAST results are available for this feature:
BLAST of CB290737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UBE2N_MACFA3.058e-1431.11Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC4_YEAST3.058e-1427.15Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC13_SCHPO3.058e-1429.29Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC31_ARATH3.993e-1429.77Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC21_ARATH3.993e-1432.46Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBCX_DICDI5.216e-1432.14Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC29_ARATH5.216e-1428.87Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBE2N_RAT6.812e-1430.43Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_DROME6.812e-1428.57Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC36_ARATH6.812e-1428.57Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290737 ID=CB290737; Name=CB290737; organism=Citrus sinensis; type=EST; length=867bp
TTTTTTTTTTTTTTTTTAATCGTAAACATAACCTATATTCTCGATACCAT
GAAATAGCAAATATAACAAAATTAGAGATTTAGAGCTATCCAATCAATCT
TGAAAGAGGAGATTAGACAGCTCCATGCTTGAATCAGCAGGCTAAGGTTG
GGGCAAGACAGAAGAAAGAATTGCAAAGAAATCATCAACAATCAAACTAG
CACAAGTTTTAAGAATTGCAAAAAGAAAAGTCGAGGTTATAAAGGATTGA
GAAACAAGAAAAAAAAAAAAAAACTTAATTTTAGTTCTACAAGCTGCAAT
TTATTGTCCGATGACCACCAATCCCTTTTTCCAATGAAAAAAGGCGTGAT
GCTCCTAAACAGAGATGCATTGCAGCACGCAATTGGAAAATCAACTCAAC
ATTTCTAGTGATTTTCTAACACAGCGACTAACTTTCTTCTTAAATTCATC
CTTTCTTTCTCTCCATTCTTTCGCAGCATCAATGTTTGCAGGAGATTCGT
CATTTGGGCTGGAAAGCATTGAGATAATACTTAAAACTATGCTCTCAACC
GTATGTACGGGAGTCCACCGTTCGGTTGCAAGCTCATAGCCATTTGGATC
ATCACCCGGGGGATGAAGAATTGAAATGCAAACCTTTCCGTCAGGGTAAA
CATTAGGATGCCACATCTCTGATGTAAACCTCACAGTTGGAGGACTCACA
GGGTAATTATCAGGAAAAGTCATTATGGCATTGAAGAATCCCCCCTCATA
TAAAGTATCAGGGGGTCCAATAATGGACACACTCCATTCAAAGACATTGC
TCTCATCCACCAACCCAGCAGAGAATCCATCAACTGGGTTCTTACAAAGA
TCTTTGAGCTGCTTCTG
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