CB290737

Overview
NameCB290737
Unique NameCB290737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.812e-14
Identity = 40/140 (28.57%), Postives = 69/140 (49.29%), Query Frame = -1
Query:  445 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDE 864
            K+ + L   P  G SA    E N+  ++V I+GP  + YEGG F   +  P+ YP++ P VRF ++++HPN+   G++C+ IL              ++W+P   +            +PN + P + + AK W+  + E
Sbjct:   12 KETQRLLSEPAPGISAS-PSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAE 137          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.897e-14
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = -1
Query:  460 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR 864
            K+ + L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF ++++HPNV   G++C+ IL              ++W+P   +            +PN + P   D A++W+
Sbjct:   10 KETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.897e-14
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = -1
Query:  460 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR 864
            K+ + L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF ++++HPNV   G++C+ IL              ++W+P   +            +PN + P   D A++W+
Sbjct:   10 KETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.897e-14
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = -1
Query:  460 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR 864
            K+ + L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF ++++HPNV   G++C+ IL              ++W+P   +            +PN + P   D A++W+
Sbjct:   10 KETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.897e-14
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = -1
Query:  460 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR 864
            K+ + L   PV G  A   DESN   + V I GP D+ +EGG F   +  P+ YP++ P VRF ++++HPNV   G++C+ IL              ++W+P   +            +PN + P   D A++W+
Sbjct:   10 KETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 130          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC9_YEAST (SUMO-conjugating enzyme UBC9 OS=Saccharomyces cerevisiae GN=UBC9 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.162e-13
Identity = 47/150 (31.33%), Postives = 71/150 (47.33%), Query Frame = -1
Query:  430 QKQLKDLCKNPVDGFSAGLVDESN----VFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKV 867
            Q++ K   K+   GF A  V +++    + +W   I G   T + GG +   + +P+ YP  PP V+F +  +HPNVYP G +C+SIL+   D           W P  T++           SPN  SPA   A + +   K E+ KKV
Sbjct:   10 QEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD-----------WRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKV 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.162e-13
Identity = 42/129 (32.56%), Postives = 61/129 (47.29%), Query Frame = -1
Query:  412 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 798
            N+     +I G   T +EGG F   M F D+YP SPP  +F   ++HPNVYP G VC+SIL    D           W P  T++            PN + PA  +A   + + + E++K+V    +K
Sbjct:   37 NLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIFCQDRTEYEKRVRAQAKK 154          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.982e-13
Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = -1
Query:  412 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 867
            QK++ D+ K P    SA LVD+ N+ +W  ++ GP  + +E G F+  +  P +YP  PPT++FT++++HPN+   DG +C  +                 W+P   +             PN ++P   + A++++  ++ F K      +K
Sbjct:    8 QKEITDMLKTPPSWCSAHLVDD-NLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVF--------------STWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKK 145          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 44/148 (29.73%), Postives = 70/148 (47.30%), Query Frame = -1
Query:  424 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSR 867
            Q +L  L      G SA   +E N+F W  +I G  DT++EG  +   ++F ++YP  PP V+F +  +HPNV   G +C+ IL              ++W+  + V             PN  SP N  AA+ W   ++E++K V +
Sbjct:   41 QSELMGLMMGGGPGISA-FPEEDNIFCWKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLW-SNQEEYRKMVEK 173          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 41/140 (29.29%), Postives = 68/140 (48.57%), Query Frame = -1
Query:  445 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDE 864
            K+ + L   P  G SA    + N   + V+I GP D+ +EGG FN  +   D+YP+S P VRF ++++HPN+   G++C+ IL              ++W+P   +            +PN + P   D A+ W+  + E
Sbjct:   10 KETQRLMTEPAPGISATPATD-NFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKE 135          
The following BLAST results are available for this feature:
BLAST of CB290737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UBC35_ARATH6.812e-1428.57Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_PONAB8.897e-1431.11Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE8.897e-1431.11Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN8.897e-1431.11Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN8.897e-1431.11Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC9_YEAST1.162e-1331.33SUMO-conjugating enzyme UBC9 OS=Saccharomyces cere... [more]
UBC9_PAGMA1.162e-1332.56SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBCB_DICDI1.982e-1326.14Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC20_ARATH2.588e-1329.73Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBE2N_DICDI5.767e-1329.29Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290737 ID=CB290737; Name=CB290737; organism=Citrus sinensis; type=EST; length=867bp
TTTTTTTTTTTTTTTTTAATCGTAAACATAACCTATATTCTCGATACCAT
GAAATAGCAAATATAACAAAATTAGAGATTTAGAGCTATCCAATCAATCT
TGAAAGAGGAGATTAGACAGCTCCATGCTTGAATCAGCAGGCTAAGGTTG
GGGCAAGACAGAAGAAAGAATTGCAAAGAAATCATCAACAATCAAACTAG
CACAAGTTTTAAGAATTGCAAAAAGAAAAGTCGAGGTTATAAAGGATTGA
GAAACAAGAAAAAAAAAAAAAAACTTAATTTTAGTTCTACAAGCTGCAAT
TTATTGTCCGATGACCACCAATCCCTTTTTCCAATGAAAAAAGGCGTGAT
GCTCCTAAACAGAGATGCATTGCAGCACGCAATTGGAAAATCAACTCAAC
ATTTCTAGTGATTTTCTAACACAGCGACTAACTTTCTTCTTAAATTCATC
CTTTCTTTCTCTCCATTCTTTCGCAGCATCAATGTTTGCAGGAGATTCGT
CATTTGGGCTGGAAAGCATTGAGATAATACTTAAAACTATGCTCTCAACC
GTATGTACGGGAGTCCACCGTTCGGTTGCAAGCTCATAGCCATTTGGATC
ATCACCCGGGGGATGAAGAATTGAAATGCAAACCTTTCCGTCAGGGTAAA
CATTAGGATGCCACATCTCTGATGTAAACCTCACAGTTGGAGGACTCACA
GGGTAATTATCAGGAAAAGTCATTATGGCATTGAAGAATCCCCCCTCATA
TAAAGTATCAGGGGGTCCAATAATGGACACACTCCATTCAAAGACATTGC
TCTCATCCACCAACCCAGCAGAGAATCCATCAACTGGGTTCTTACAAAGA
TCTTTGAGCTGCTTCTG
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