CB290737

Overview
NameCB290737
Unique NameCB290737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.531e-13
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = -1
Query:  547 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 867
            QK+L D+  +P    SAG   + N++EW  +I+GPP ++YEGG F   +TF   YP  PP V F + ++H N+   G +C+ IL              + W+P  T+
Sbjct:   53 QKELADITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTI 145          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.531e-13
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = -1
Query:  547 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 867
            QK+L D+  +P    SAG   + N++EW  +I+GPP ++YEGG F   +TF   YP  PP V F + ++H N+   G +C+ IL              + W+P  T+
Sbjct:   53 QKELADITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTI 145          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 44/148 (29.73%), Postives = 69/148 (46.62%), Query Frame = -1
Query:  424 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSR 867
            Q +L  L      G SA   +E N+F W  +I G  DT++EG  +   +TF ++YP   P V+F +  +HPNV   G +C+ IL              ++W+  + V             PN  SP N  AA+ W   ++E++K V +
Sbjct:   42 QSELMGLMMGADPGISA-FPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQ-------------DKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW-SNQEEYRKMVEK 174          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  547 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 867
            QK+L ++  +P    SAG   + N++EW  +I+GPP ++YEGG F   +TF  +YP  PP V F + ++H N+   G +C+ IL              + W+P  T+
Sbjct:   67 QKELAEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTI 159          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  547 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 867
            QK+L ++  +P    SAG   + N++EW  +I+GPP ++YEGG F   +TF  +YP  PP V F + ++H N+   G +C+ IL              + W+P  T+
Sbjct:   67 QKELAEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTI 159          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.285e-12
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  547 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 867
            QK+L ++  +P    SAG   + N++EW  +I+GPP ++YEGG F   +TF  +YP  PP V F + ++H N+   G +C+ IL              + W+P  T+
Sbjct:   67 QKELAEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTI 159          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.678e-12
Identity = 45/154 (29.22%), Postives = 70/154 (45.45%), Query Frame = -1
Query:  406 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSL 867
            Q++L  L  +   G SA   +  N+F+W  +I G   T+YE   +   + FP  YP + PTV+F +  +HPNV   G +C+ IL              E+W+ ++ V             PN +SP N  AA+ W+     FKK +     K +
Sbjct:   36 QQELMTLMMSGDKGISA-FPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDIL-------------KEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQV 174          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.678e-12
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  547 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 867
            QK+L ++  +P    SAG   + N++EW  +I+GPP ++YEGG F   +TF  +YP  PP V F + ++H N+   G +C+ IL              + W+P  T+
Sbjct:   61 QKELAEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTI 153          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.678e-12
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = -1
Query:  547 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV 867
            QK+L ++  +P    SAG   + N++EW  +I+GPP ++YEGG F   +TF  +YP  PP V F + ++H N+   G +C+ IL              + W+P  T+
Sbjct:   61 QKELAEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTI 153          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 43/152 (28.29%), Postives = 68/152 (44.74%), Query Frame = -1
Query:  412 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 867
            +++L+ L K P  G      +ESN+ +    IIG   + YEGG FN  +  P+ YP  PP +RF + ++HPN+   G++C+ IL  P   P G       W P   +             PN + P   D + E++  +  F     +   K
Sbjct:    8 KRELQLLNKEPPPGVICWQ-NESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLP---PKG------AWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEK 149          
The following BLAST results are available for this feature:
BLAST of CB290737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UB2E1_MOUSE7.531e-1334.58Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN7.531e-1334.58Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBC19_ARATH1.285e-1229.73Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UB2E3_MOUSE1.285e-1233.64Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN1.285e-1233.64Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN1.285e-1233.64Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBE2C_HUMAN1.678e-1229.22Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UB2E2_MOUSE1.678e-1233.64Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN1.678e-1233.64Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBE2T_XENLA2.191e-1228.29Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290737 ID=CB290737; Name=CB290737; organism=Citrus sinensis; type=EST; length=867bp
TTTTTTTTTTTTTTTTTAATCGTAAACATAACCTATATTCTCGATACCAT
GAAATAGCAAATATAACAAAATTAGAGATTTAGAGCTATCCAATCAATCT
TGAAAGAGGAGATTAGACAGCTCCATGCTTGAATCAGCAGGCTAAGGTTG
GGGCAAGACAGAAGAAAGAATTGCAAAGAAATCATCAACAATCAAACTAG
CACAAGTTTTAAGAATTGCAAAAAGAAAAGTCGAGGTTATAAAGGATTGA
GAAACAAGAAAAAAAAAAAAAAACTTAATTTTAGTTCTACAAGCTGCAAT
TTATTGTCCGATGACCACCAATCCCTTTTTCCAATGAAAAAAGGCGTGAT
GCTCCTAAACAGAGATGCATTGCAGCACGCAATTGGAAAATCAACTCAAC
ATTTCTAGTGATTTTCTAACACAGCGACTAACTTTCTTCTTAAATTCATC
CTTTCTTTCTCTCCATTCTTTCGCAGCATCAATGTTTGCAGGAGATTCGT
CATTTGGGCTGGAAAGCATTGAGATAATACTTAAAACTATGCTCTCAACC
GTATGTACGGGAGTCCACCGTTCGGTTGCAAGCTCATAGCCATTTGGATC
ATCACCCGGGGGATGAAGAATTGAAATGCAAACCTTTCCGTCAGGGTAAA
CATTAGGATGCCACATCTCTGATGTAAACCTCACAGTTGGAGGACTCACA
GGGTAATTATCAGGAAAAGTCATTATGGCATTGAAGAATCCCCCCTCATA
TAAAGTATCAGGGGGTCCAATAATGGACACACTCCATTCAAAGACATTGC
TCTCATCCACCAACCCAGCAGAGAATCCATCAACTGGGTTCTTACAAAGA
TCTTTGAGCTGCTTCTG
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