CB290737

Overview
NameCB290737
Unique NameCB290737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 38/144 (26.39%), Postives = 70/144 (48.61%), Query Frame = -1
Query:  433 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKK 864
            ++L+++   P +G    L++ES+V +    I GP  T Y  G F   +T   ++P++PP   F ++++HPNV  +G++C++ L              + W P   ++            PN ES  N +A K   ER D++ ++
Sbjct:   21 RELQEMETTPPEGIKV-LINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTL-------------KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQR 150          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 38/144 (26.39%), Postives = 70/144 (48.61%), Query Frame = -1
Query:  433 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKK 864
            ++L+++   P +G    L++ES+V +    I GP  T Y  G F   +T   ++P++PP   F ++++HPNV  +G++C++ L              + W P   ++            PN ES  N +A K   ER D++ ++
Sbjct:   21 RELQEMETTPPEGIKV-LINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTL-------------KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQR 150          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 38/127 (29.92%), Postives = 60/127 (47.24%), Query Frame = -1
Query:  436 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKK 813
            LVDE N  E    I GPPDT YEGG +   +  P+ YP +PP VRF +++WHPN+    G +C+ IL              ++W    T+            +   + P +   A ++++  + FK+
Sbjct:   31 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQ 143          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 38/127 (29.92%), Postives = 60/127 (47.24%), Query Frame = -1
Query:  436 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKK 813
            LVDE N  E    I GPPDT YEGG +   +  P+ YP +PP VRF +++WHPN+    G +C+ IL              ++W    T+            +   + P +   A ++++  + FK+
Sbjct:   31 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQ 143          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 38/127 (29.92%), Postives = 60/127 (47.24%), Query Frame = -1
Query:  436 LVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYP-DGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKK 813
            LVDE N  E    I GPPDT YEGG +   +  P+ YP +PP VRF +++WHPN+    G +C+ IL              ++W    T+            +   + P +   A ++++  + FK+
Sbjct:   31 LVDE-NFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL-------------KDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQ 143          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 35/121 (28.93%), Postives = 59/121 (48.76%), Query Frame = -1
Query:  412 IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTV-EXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 771
            + P +  Y+GG F   +  PD Y + PP V+  +++WHPN+   G++C+S+L     D  G       W P  T+ +             N   P NI+AA+   + K++F+ KV   +R+
Sbjct:   69 VSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTG-------WAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRR 182          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 39/152 (25.66%), Postives = 65/152 (42.76%), Query Frame = -1
Query:  412 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 867
            +++L  L   P  G +    D+  + +    I+G  +T YE G F   +  P+ YP  PP +RF + ++HPN+   G++C+ +L  P   P G       W P   +             PN + P   D + E++  K  F K   +   K
Sbjct:    8 KRELHMLATEPPPGITCWQ-DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLP---PKG------AWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 149          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 46/169 (27.22%), Postives = 77/169 (45.56%), Query Frame = -1
Query:  418 QKQLKDLCKNPVDGFSAGLVDES-NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNV-YPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPAN--------------IDAAKEWRE---RKDEFKKKVSRCV 867
            QK+L+D C+   D     +  +S N+   + +I GP  T YEGG F   +T PD YP  PP ++F++++WHPN+    G +C+ IL              ++W+P  T++           +P  + P +              +  A+ W E   +K   ++KV R V
Sbjct:    8 QKELQD-CERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDIL-------------KDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFAKKSSLEEKVKRLV 162          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 48/166 (28.92%), Postives = 75/166 (45.18%), Query Frame = -1
Query:  373 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDT-LYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEMLS*FSNCVL 867
            QK +++L   P       ++   N  E S++II  PD   Y+GG F    TF + YP+ PP V   ++++HPN+ P GK+C++IL              E W+P   ++            PN   P N +AA+   + K EF   V R       + S +  CV+
Sbjct:   38 QKDIEELELPPT--VRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILR-------------EDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLV-RLAMSGAMVGSTYYECVI 187          
The following BLAST results are available for this feature:
BLAST of CB290737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UBE2S_DROSE7.049e-1126.39Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME7.049e-1126.39Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBE2K_MOUSE7.049e-1129.92Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN7.049e-1129.92Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN7.049e-1129.92Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UB2FB_MOUSE7.049e-1128.93NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBE2T_HUMAN9.206e-1125.66Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC27_ARATH9.206e-1127.22Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC12_CANGA9.206e-1128.92NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290737 ID=CB290737; Name=CB290737; organism=Citrus sinensis; type=EST; length=867bp
TTTTTTTTTTTTTTTTTAATCGTAAACATAACCTATATTCTCGATACCAT
GAAATAGCAAATATAACAAAATTAGAGATTTAGAGCTATCCAATCAATCT
TGAAAGAGGAGATTAGACAGCTCCATGCTTGAATCAGCAGGCTAAGGTTG
GGGCAAGACAGAAGAAAGAATTGCAAAGAAATCATCAACAATCAAACTAG
CACAAGTTTTAAGAATTGCAAAAAGAAAAGTCGAGGTTATAAAGGATTGA
GAAACAAGAAAAAAAAAAAAAAACTTAATTTTAGTTCTACAAGCTGCAAT
TTATTGTCCGATGACCACCAATCCCTTTTTCCAATGAAAAAAGGCGTGAT
GCTCCTAAACAGAGATGCATTGCAGCACGCAATTGGAAAATCAACTCAAC
ATTTCTAGTGATTTTCTAACACAGCGACTAACTTTCTTCTTAAATTCATC
CTTTCTTTCTCTCCATTCTTTCGCAGCATCAATGTTTGCAGGAGATTCGT
CATTTGGGCTGGAAAGCATTGAGATAATACTTAAAACTATGCTCTCAACC
GTATGTACGGGAGTCCACCGTTCGGTTGCAAGCTCATAGCCATTTGGATC
ATCACCCGGGGGATGAAGAATTGAAATGCAAACCTTTCCGTCAGGGTAAA
CATTAGGATGCCACATCTCTGATGTAAACCTCACAGTTGGAGGACTCACA
GGGTAATTATCAGGAAAAGTCATTATGGCATTGAAGAATCCCCCCTCATA
TAAAGTATCAGGGGGTCCAATAATGGACACACTCCATTCAAAGACATTGC
TCTCATCCACCAACCCAGCAGAGAATCCATCAACTGGGTTCTTACAAAGA
TCTTTGAGCTGCTTCTG
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