CB290737

Overview
NameCB290737
Unique NameCB290737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 5.727e-37
Identity = 72/155 (46.45%), Postives = 98/155 (63.23%), Query Frame = -1
Query:  406 QLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAA---KEWRERKDEFKKKVSRCVRKSL 861
            +LK L + PV+GF   LVDE +++ W V+I GPP+T YEGG+F A + FP +YP SPP  RF ++MWHPN+Y  G VCISILHPP DDP   EL +ERW P   V             PN  SPAN+DA+   ++W+E K +  ++ +  +RK +
Sbjct:   16 ELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGK-DREYTDIIRKQV 169          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.490e-32
Identity = 69/161 (42.86%), Postives = 95/161 (59.01%), Query Frame = -1
Query:  394 QLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 861
            + ++L +NP + F    V+E+N+ EW V + GP DT YEGG F A +TFP NYP  PP + FTSEMWHPN+YPDG++CISILH    +  G       W+P   +E            PN +SPAN+DAAK +R     E  + +  +V + V+KSL+  S
Sbjct:    9 EYRNLTENPSEHFKVS-VNENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILHTDNVEERGM-----TWSPAQKIETVLLSVISLFNEPNTDSPANVDAAKSYRKLMHKEDLESYPMEVKKTVKKSLDECS 163          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.490e-32
Identity = 68/161 (42.24%), Postives = 95/161 (59.01%), Query Frame = -1
Query:  394 QLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 861
            + + L +NP + F    V+E+N+ EW V + GPPDTLYEGG F A + FP  YP +PP + FTSEMWHPN+YPDG++CISILH    +  G       W+P   ++            PN +SPAN+DAAK +R     E  + +  +V + V+KSL+  S
Sbjct:    9 EYRHLIENPSENFKIS-VNENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESYPMEVKKTVKKSLDECS 163          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.252e-32
Identity = 69/161 (42.86%), Postives = 95/161 (59.01%), Query Frame = -1
Query:  394 QLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 861
            + + L +NP + F    V+E+++ EW V + GPPDTLYEGG F A + FP  YP +PP + FTSEMWHPN+YPDGK+CISILH    +  G       W+P   ++            PN +SPAN+DAAK +R     E  + +  +V R V+KSL+  S
Sbjct:    9 EYRHLIENPSENFKIS-VNENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGM-----TWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKLMHKEDLESYPMEVKRTVKKSLDECS 163          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.244e-32
Identity = 70/161 (43.48%), Postives = 94/161 (58.39%), Query Frame = -1
Query:  394 QLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 861
            + + L +NP + F    V+E+N+ EW V + GP DTLYEGG F A + FP NYP  PP + FTSEMWHPN+Y DG+VCISILH    +  G       W+PV  ++            PN +SPAN+DAAK +R     E  + +  +V R V+KSL+  S
Sbjct:    9 EYRHLTENPSENFKVS-VNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGM-----TWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYRRFVHKEDLESYPMEVKRTVKKSLDECS 163          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.753e-31
Identity = 69/161 (42.86%), Postives = 92/161 (57.14%), Query Frame = -1
Query:  394 QLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWR-----ERKDEFKKKVSRCVRKSLEMLS 861
            + K+L  NP + F    V+E N+ EW V + GPPDTLYEGG F A + FP  YP  PP + FTSEMWHPN+Y DGK+CISILH    +  G       W+P   ++            PN +SPAN+DAAK +R     E  + +  +V + V+KSL+  S
Sbjct:    9 EYKNLIVNPSEHFKIS-VNEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGM-----TWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESYPMEVKKTVKKSLDECS 163          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.973e-29
Identity = 63/146 (43.15%), Postives = 90/146 (61.64%), Query Frame = -1
Query:  409 KNPVDGFSAGLVDESNVFEWSVSI-IGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 843
            K  +  F   L D+SN+F W++ + +   D++Y GGFF A M FP+++P SPP  RFT  ++HPNVY DG++CISILH  G DP   E   E W+PV TVE            PN  SPAN+DAA ++R+  +++K++V   V +S
Sbjct:   23 KKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSG-DPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVKMEVERS 167          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.759e-23
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K L ++P  G S G   E+N+ +W+  I GP  T +E G F  ++ F + YP  PPTVRF S+M+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   11 RDFKRLQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.759e-23
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K L ++P  G S G   E+N+ +W+  I GP  T +E G F  ++ F + YP  PPTVRF S+M+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   11 RDFKRLQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.759e-23
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K L ++P  G S G   E+N+ +W+  I GP  T +E G F  ++ F + YP  PPTVRF S+M+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E K E++K+VS  V +S
Sbjct:   11 RDFKRLQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
The following BLAST results are available for this feature:
BLAST of CB290737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UB2R1_HUMAN5.727e-3746.45Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFK52.490e-3242.86Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFB72.490e-3242.24Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFWA3.252e-3242.86Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP47.244e-3243.48Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFM22.753e-3142.86Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC3_YEAST1.973e-2943.15Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBE2B_RAT2.759e-2337.50Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT2.759e-2337.50Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE2.759e-2337.50Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290737 ID=CB290737; Name=CB290737; organism=Citrus sinensis; type=EST; length=867bp
TTTTTTTTTTTTTTTTTAATCGTAAACATAACCTATATTCTCGATACCAT
GAAATAGCAAATATAACAAAATTAGAGATTTAGAGCTATCCAATCAATCT
TGAAAGAGGAGATTAGACAGCTCCATGCTTGAATCAGCAGGCTAAGGTTG
GGGCAAGACAGAAGAAAGAATTGCAAAGAAATCATCAACAATCAAACTAG
CACAAGTTTTAAGAATTGCAAAAAGAAAAGTCGAGGTTATAAAGGATTGA
GAAACAAGAAAAAAAAAAAAAAACTTAATTTTAGTTCTACAAGCTGCAAT
TTATTGTCCGATGACCACCAATCCCTTTTTCCAATGAAAAAAGGCGTGAT
GCTCCTAAACAGAGATGCATTGCAGCACGCAATTGGAAAATCAACTCAAC
ATTTCTAGTGATTTTCTAACACAGCGACTAACTTTCTTCTTAAATTCATC
CTTTCTTTCTCTCCATTCTTTCGCAGCATCAATGTTTGCAGGAGATTCGT
CATTTGGGCTGGAAAGCATTGAGATAATACTTAAAACTATGCTCTCAACC
GTATGTACGGGAGTCCACCGTTCGGTTGCAAGCTCATAGCCATTTGGATC
ATCACCCGGGGGATGAAGAATTGAAATGCAAACCTTTCCGTCAGGGTAAA
CATTAGGATGCCACATCTCTGATGTAAACCTCACAGTTGGAGGACTCACA
GGGTAATTATCAGGAAAAGTCATTATGGCATTGAAGAATCCCCCCTCATA
TAAAGTATCAGGGGGTCCAATAATGGACACACTCCATTCAAAGACATTGC
TCTCATCCACCAACCCAGCAGAGAATCCATCAACTGGGTTCTTACAAAGA
TCTTTGAGCTGCTTCTG
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