CB290737

Overview
NameCB290737
Unique NameCB290737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.051e-22
Identity = 56/154 (36.36%), Postives = 80/154 (51.95%), Query Frame = -1
Query:  403 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 864
            +  K +  +P  G SA  V + NV  W+  IIGP DT +E G F  +M F + YP  PP V+F SEM+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++A+  +++ + E+ K+V   V KS E
Sbjct:   11 RDFKRMQTDPPAGVSASPVPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQ-------------NRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSWE 150          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.051e-22
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = -1
Query:  403 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 864
            +  K + ++   G SA  + + NV  W+  IIGP DT YE G F  ++ F + YP  PP V+F SEM+HPNVY +G++C+ IL               RWTP + V             PN  SPAN++AA  +++ K ++ K+V   V KS E
Sbjct:   11 RDFKRMKEDSPPGVSASPLPD-NVMIWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSWE 150          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.984e-22
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K L ++P  G S G   ++N+  W+  I GP DT ++GG F   + F ++YP  PPTVRF S M+HPN+Y DG +C+ IL               +W+P++ V             PN  SPAN +AA+ + E K E+ ++V   V +S
Sbjct:   11 RDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.204e-22
Identity = 53/152 (34.87%), Postives = 79/152 (51.97%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K L  +P  G S G   ++N+  W+  I GP DT ++GG F   + F ++YP  PPTVRF S M+HPN+Y DG +C+ IL               +W+P++ V             PN  SPAN +AA+ + E K E+ ++V   V +S
Sbjct:   11 RDFKRLQHDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.204e-22
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K L ++P  G S G   ++N+  W+  I GP DT ++GG F   + F ++YP  PPTVRF S M+HPN+Y DG +C+ IL               +W+P++ V             PN  SPAN +AA+ + E K E+ ++V   V +S
Sbjct:   11 RDFKRLQQDPPAGIS-GAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.796e-22
Identity = 56/154 (36.36%), Postives = 82/154 (53.25%), Query Frame = -1
Query:  403 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 864
            +  K + ++P  G SA  V + NV  W+  IIGP DT +E G F  +++F + YP  PP V+F S M+HPNVY +G++C+ IL               RW+P + V             PN+ SPAN +AA+  RE K E+ ++V + V  S E
Sbjct:   11 RDFKRMQQDPPAGVSASPVSD-NVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQ-------------NRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSWE 150          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.796e-22
Identity = 50/137 (36.50%), Postives = 75/137 (54.74%), Query Frame = -1
Query:  409 AGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 819
            +G  +  N+  W+  I GPP+T +E G F   +TF D YP  PPTVRF S+M+HPN+Y +G++C+ IL               RW+P + V             PN  SPAN+DAA+ ++E   E++++V + V  S
Sbjct:   25 SGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQ-------------NRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.876e-22
Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = -1
Query:  397 FSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISIL-HPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLEML 825
            +  G ++  +   W +      D+LY G    A+M FP +YP+ PPT++F S+M+HPN+Y DGK+CISIL      D + +    ++WTPV  +            SPN  SPAN+DA+  +R+  +E+ K+V R  R+  E L
Sbjct:   55 YPRGSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIAREEDEKL 198          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.876e-22
Identity = 56/154 (36.36%), Postives = 80/154 (51.95%), Query Frame = -1
Query:  403 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 864
            +  K +  +P  G SA  V + NV  W+  IIGP DT +E G F  +M F + YP  PP V+F S+M+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++A+  +R+ + E+ K+V   V KS E
Sbjct:   11 RDFKRMQTDPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQ-------------NRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWE 150          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.977e-21
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = -1
Query:  403 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 864
            +  K +  +P  G SA  V + NV  W+  IIGP DT +E G F  +M F + YP  PP V+F S+M+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++A+  +++ + E+ K+V   V KS E
Sbjct:   11 RDFKRMQTDPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQ-------------NRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSWE 150          
The following BLAST results are available for this feature:
BLAST of CB290737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UBC2_NECHA3.051e-2236.36Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_KLULA3.051e-2236.36Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_ARATH3.984e-2234.87Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_MEDSA5.204e-2234.87Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC1_ARATH5.204e-2234.87Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_SCHPO6.796e-2236.36Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC2_CRYNE6.796e-2236.50Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
Y1A1_ENCCU8.876e-2236.11Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC2_EMENI8.876e-2236.36Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU1.977e-2135.71Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290737 ID=CB290737; Name=CB290737; organism=Citrus sinensis; type=EST; length=867bp
TTTTTTTTTTTTTTTTTAATCGTAAACATAACCTATATTCTCGATACCAT
GAAATAGCAAATATAACAAAATTAGAGATTTAGAGCTATCCAATCAATCT
TGAAAGAGGAGATTAGACAGCTCCATGCTTGAATCAGCAGGCTAAGGTTG
GGGCAAGACAGAAGAAAGAATTGCAAAGAAATCATCAACAATCAAACTAG
CACAAGTTTTAAGAATTGCAAAAAGAAAAGTCGAGGTTATAAAGGATTGA
GAAACAAGAAAAAAAAAAAAAAACTTAATTTTAGTTCTACAAGCTGCAAT
TTATTGTCCGATGACCACCAATCCCTTTTTCCAATGAAAAAAGGCGTGAT
GCTCCTAAACAGAGATGCATTGCAGCACGCAATTGGAAAATCAACTCAAC
ATTTCTAGTGATTTTCTAACACAGCGACTAACTTTCTTCTTAAATTCATC
CTTTCTTTCTCTCCATTCTTTCGCAGCATCAATGTTTGCAGGAGATTCGT
CATTTGGGCTGGAAAGCATTGAGATAATACTTAAAACTATGCTCTCAACC
GTATGTACGGGAGTCCACCGTTCGGTTGCAAGCTCATAGCCATTTGGATC
ATCACCCGGGGGATGAAGAATTGAAATGCAAACCTTTCCGTCAGGGTAAA
CATTAGGATGCCACATCTCTGATGTAAACCTCACAGTTGGAGGACTCACA
GGGTAATTATCAGGAAAAGTCATTATGGCATTGAAGAATCCCCCCTCATA
TAAAGTATCAGGGGGTCCAATAATGGACACACTCCATTCAAAGACATTGC
TCTCATCCACCAACCCAGCAGAGAATCCATCAACTGGGTTCTTACAAAGA
TCTTTGAGCTGCTTCTG
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