CB290737

Overview
NameCB290737
Unique NameCB290737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.582e-21
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = -1
Query:  403 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 864
            +  K +  +P  G SA  + + NV  W+  IIGP DT +E G F  +M F + YP  PP V+F S+M+HPNVY +G++C+ IL               RW+P + V             PN  SPAN++A+  +++ + E+ K+V   V +S E
Sbjct:   11 RDFKRMQTDPPAGVSASPIPD-NVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQ-------------NRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSWE 150          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.582e-21
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = -1
Query:  403 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKSLE 864
            +  K +  +P  G SA  V + NV  W+  IIGP DT +E G F  +M F + YP  PP+V+F SEM+HPNVY  G++C+ IL               RW+P + V             PN  S AN++A+  +++ + E+ K+V   V KS E
Sbjct:   11 RDFKRMQTDPPAGVSASPVPD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQ-------------NRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSWE 150          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.373e-21
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K L ++P  G S G   E N+  W   I GP +T +E G F   + F + YP  PPTV+F S+M+HPNVY DG +C+ IL               RW+P + V             PN  SPAN  AA+ ++E + E++K+V + V +S
Sbjct:   11 RDFKKLQEDPPAGVS-GAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-------------NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.373e-21
Identity = 53/144 (36.81%), Postives = 74/144 (51.39%), Query Frame = -1
Query:  436 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKK 867
            + +L  L  +   G SA    +SN+  W+ +I GP DT YEG  F   M+FP NYP SPPT+ FTS MWHPNV   G +C+ IL              ++W+ V+ V+            PN+ SP N  AA+ W +   E+K+
Sbjct:   34 RSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDIL-------------KDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKR 164          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.405e-21
Identity = 52/152 (34.21%), Postives = 78/152 (51.32%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K L  +P  G S G   E+N+  W   I GP D+++EG  F   + F + YP   PTV+F S+M+HPNVY DG +C+ IL               +W+P++ +             PN  SPAN ++A+ +RE K E+ +KV   V +S
Sbjct:   11 RDFKRLQSDPPAGIS-GAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQ-------------NQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.405e-21
Identity = 52/152 (34.21%), Postives = 80/152 (52.63%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K + ++P  G SA  + + NV +W+  IIGP DT +E G F  +++F + YP  PP V+F SEM+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++AA  +++ +  + K+V   V  S
Sbjct:   11 RDFKRMQQDPPSGVSASPLPD-NVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQ-------------NRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.753e-21
Identity = 54/152 (35.53%), Postives = 77/152 (50.66%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K L  +P  G S G     N+  W+  I GP DT +E G F  ++TF ++YP  PPTV+F S+M+HPNVY +G++C+ IL               RW+P + V             PN  SPAN +AA  +RE   E+ ++V   V  S
Sbjct:   11 RDFKRLSTDPPGGIS-GAPCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQ-------------NRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEAS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.753e-21
Identity = 53/149 (35.57%), Postives = 73/149 (48.99%), Query Frame = -1
Query:  421 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRC 867
            Q +L  L  +  +  SA  VD++++  W   I GP DT Y G  F   + FP NYP  PP ++F S MWHPNV   G +C+ IL              E+W+ V+ VE            PN+ SP N  AA+ W    +E++KKV  C
Sbjct:   14 QNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDIL-------------KEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEYRKKVLAC 149          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.813e-21
Identity = 52/152 (34.21%), Postives = 79/152 (51.97%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K + ++   G SA  + + NV  W+  IIGP DT +E G F  I+ F + YP  PP+V+F SEM+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++AA  +++ + ++ K+V   V  S
Sbjct:   11 RDFKRMQQDAPSGVSASPLPD-NVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQ-------------NRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENS 148          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.282e-20
Identity = 50/152 (32.89%), Postives = 80/152 (52.63%), Query Frame = -1
Query:  409 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 864
            +  K + ++P  G SA  V + NV  W+  IIGP +T +E G F  ++ F + YP  PP V+F S+M+HPNVY  G++C+ IL               RW+P + V             PN  SPAN++A+  +++ + +++K+V   V  S
Sbjct:   11 RDFKRMQQDPPQGVSASPVAD-NVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQ-------------NRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEAS 148          
The following BLAST results are available for this feature:
BLAST of CB290737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UBC2_TRIHA2.582e-2134.42Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_NEUCR2.582e-2135.71Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC1_CAEEL3.373e-2135.53Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC11_SCHPO3.373e-2136.81Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC2_DICDI4.405e-2134.21Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC2_CANAL4.405e-2134.21Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC2_USTMA5.753e-2135.53Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC11_YEAST5.753e-2135.57Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC2_DEBHA9.813e-2134.21Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_YARLI1.282e-2032.89Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290737 ID=CB290737; Name=CB290737; organism=Citrus sinensis; type=EST; length=867bp
TTTTTTTTTTTTTTTTTAATCGTAAACATAACCTATATTCTCGATACCAT
GAAATAGCAAATATAACAAAATTAGAGATTTAGAGCTATCCAATCAATCT
TGAAAGAGGAGATTAGACAGCTCCATGCTTGAATCAGCAGGCTAAGGTTG
GGGCAAGACAGAAGAAAGAATTGCAAAGAAATCATCAACAATCAAACTAG
CACAAGTTTTAAGAATTGCAAAAAGAAAAGTCGAGGTTATAAAGGATTGA
GAAACAAGAAAAAAAAAAAAAAACTTAATTTTAGTTCTACAAGCTGCAAT
TTATTGTCCGATGACCACCAATCCCTTTTTCCAATGAAAAAAGGCGTGAT
GCTCCTAAACAGAGATGCATTGCAGCACGCAATTGGAAAATCAACTCAAC
ATTTCTAGTGATTTTCTAACACAGCGACTAACTTTCTTCTTAAATTCATC
CTTTCTTTCTCTCCATTCTTTCGCAGCATCAATGTTTGCAGGAGATTCGT
CATTTGGGCTGGAAAGCATTGAGATAATACTTAAAACTATGCTCTCAACC
GTATGTACGGGAGTCCACCGTTCGGTTGCAAGCTCATAGCCATTTGGATC
ATCACCCGGGGGATGAAGAATTGAAATGCAAACCTTTCCGTCAGGGTAAA
CATTAGGATGCCACATCTCTGATGTAAACCTCACAGTTGGAGGACTCACA
GGGTAATTATCAGGAAAAGTCATTATGGCATTGAAGAATCCCCCCTCATA
TAAAGTATCAGGGGGTCCAATAATGGACACACTCCATTCAAAGACATTGC
TCTCATCCACCAACCCAGCAGAGAATCCATCAACTGGGTTCTTACAAAGA
TCTTTGAGCTGCTTCTG
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