CB290737

Overview
NameCB290737
Unique NameCB290737
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.385e-19
Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = -1
Query:  412 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 867
            QK+L DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT++++HPN+  +G +C+ IL               +W+P  TV             PN + P   D A+ ++  K+++ +      +K
Sbjct:    7 QKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 144          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.385e-19
Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = -1
Query:  412 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 867
            QK+L DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT++++HPN+  +G +C+ IL               +W+P  TV             PN + P   D A+ ++  K+++ +      +K
Sbjct:    7 QKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 144          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.385e-19
Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = -1
Query:  412 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 867
            QK+L DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP + FT++++HPN+  +G +C+ IL               +W+P  TV             PN + P   D A+ ++  K+++ +      +K
Sbjct:    7 QKELSDLQRDPPAHCSAGPVGD-DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR-------------SQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 144          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.200e-18
Identity = 52/148 (35.14%), Postives = 75/148 (50.68%), Query Frame = -1
Query:  424 QKQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSR 867
            Q +L +L   P  G SA   D  N+F W  +I G  DT+YE   F   + FP +YP  PPTV+F ++ +HPNV  +G +C+ IL              ++W+PV+ V             PN+ESP N  AA  W   +DE+KK + +
Sbjct:   12 QSELMNLMMGPSPGISA-FPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDIL-------------KDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLW-SNQDEYKKVLDK 144          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.954e-18
Identity = 46/130 (35.38%), Postives = 66/130 (50.77%), Query Frame = -1
Query:  409 NVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRKS 798
            ++  W V I G P T +EGG +   M FP+ YP  PP  RFT  ++HPNVYP G VC+SIL+             E W P  T++            PN  SPA  +A   +++ K E++K+V    R++
Sbjct:   37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN-----------EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAREN 155          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.326e-17
Identity = 45/151 (29.80%), Postives = 78/151 (51.66%), Query Frame = -1
Query:  412 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 864
            K+L+DL ++P    SAG V + ++F W  +I+GPPD+ Y+GG F   + FP +YP  PP V FT+ ++HPN+  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  ++++ +      RK
Sbjct:    8 KELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRK 144          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.955e-17
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = -1
Query:  412 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 864
            K+LKDL K+P    SAG V E ++F W  +I+GP D+ Y GG F   + FP +YP  PP V F ++++HPN+  +G +C+ IL              E+W+P  T+             PN + P   + A  ++  K++++       +K
Sbjct:    8 KELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQK 144          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.955e-17
Identity = 46/151 (30.46%), Postives = 76/151 (50.33%), Query Frame = -1
Query:  412 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 864
            K+LKDL K+P    SAG V E ++F W  +I+GPP++ Y GG F   + FP +YP  PP V F ++++HPN+  +G +C+ IL              E+W+P  T+             PN + P   + A  ++  + +++       +K
Sbjct:    8 KELKDLQKDPPSNCSAGPVAE-DMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQK 144          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.955e-17
Identity = 46/151 (30.46%), Postives = 75/151 (49.67%), Query Frame = -1
Query:  412 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 864
            K+L DL ++P    SAG V E ++F W  +I+GP D+ Y+GG F   + FP  YP  PP V FT+ ++HPNV  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +      +K
Sbjct:    8 KELNDLAQDPPAQCSAGPVGE-DMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILR-------------SQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQK 144          
BLAST of CB290737 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.955e-17
Identity = 46/151 (30.46%), Postives = 75/151 (49.67%), Query Frame = -1
Query:  412 KQLKDLCKNPVDGFSAGLVDESNVFEWSVSIIGPPDTLYEGGFFNAIMTFPDNYPVSPPTVRFTSEMWHPNVYPDGKVCISILHPPGDDPNGYELATERWTPVHTVEXXXXXXXXXXXSPNDESPANIDAAKEWRERKDEFKKKVSRCVRK 864
            K+L DL ++P    SAG V E ++F W  +I+GP D+ Y+GG F   + FP  YP  PP V FT+ ++HPNV  +G +C+ IL               +W+P  T+             PN + P   + A+ ++  +D++ +      +K
Sbjct:    8 KELNDLAQDPPAQCSAGPVGE-DMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILR-------------SQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQK 144          
The following BLAST results are available for this feature:
BLAST of CB290737 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
UB2D1_MOUSE5.385e-1930.92Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN5.385e-1930.92Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN5.385e-1930.92Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBE2C_DICDI1.200e-1835.14Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBC9_SCHPO5.954e-1835.38SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBCD1_DROME1.326e-1729.80Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC9_ARATH2.955e-1731.13SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC11_ARATH2.955e-1730.46Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
U2D2B_RAT2.955e-1730.46Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE2.955e-1730.46Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290737 ID=CB290737; Name=CB290737; organism=Citrus sinensis; type=EST; length=867bp
TTTTTTTTTTTTTTTTTAATCGTAAACATAACCTATATTCTCGATACCAT
GAAATAGCAAATATAACAAAATTAGAGATTTAGAGCTATCCAATCAATCT
TGAAAGAGGAGATTAGACAGCTCCATGCTTGAATCAGCAGGCTAAGGTTG
GGGCAAGACAGAAGAAAGAATTGCAAAGAAATCATCAACAATCAAACTAG
CACAAGTTTTAAGAATTGCAAAAAGAAAAGTCGAGGTTATAAAGGATTGA
GAAACAAGAAAAAAAAAAAAAAACTTAATTTTAGTTCTACAAGCTGCAAT
TTATTGTCCGATGACCACCAATCCCTTTTTCCAATGAAAAAAGGCGTGAT
GCTCCTAAACAGAGATGCATTGCAGCACGCAATTGGAAAATCAACTCAAC
ATTTCTAGTGATTTTCTAACACAGCGACTAACTTTCTTCTTAAATTCATC
CTTTCTTTCTCTCCATTCTTTCGCAGCATCAATGTTTGCAGGAGATTCGT
CATTTGGGCTGGAAAGCATTGAGATAATACTTAAAACTATGCTCTCAACC
GTATGTACGGGAGTCCACCGTTCGGTTGCAAGCTCATAGCCATTTGGATC
ATCACCCGGGGGATGAAGAATTGAAATGCAAACCTTTCCGTCAGGGTAAA
CATTAGGATGCCACATCTCTGATGTAAACCTCACAGTTGGAGGACTCACA
GGGTAATTATCAGGAAAAGTCATTATGGCATTGAAGAATCCCCCCTCATA
TAAAGTATCAGGGGGTCCAATAATGGACACACTCCATTCAAAGACATTGC
TCTCATCCACCAACCCAGCAGAGAATCCATCAACTGGGTTCTTACAAAGA
TCTTTGAGCTGCTTCTG
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