CB290738

Overview
NameCB290738
Unique NameCB290738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   91 LQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            L  +L  L + PV+GF   + DES++    V+I GPP+TL EGG+F A + FP + P SPPT RF ++MW  N Y +G VCISI HPP DDP   EL +ER  P
Sbjct:   13 LMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNP 116          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   91 LQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            L  +L  L + PV+GF   + DES++    V+I GPP+TL EGG+F A + FP + P SPPT RF ++MW  N Y +G VCISI HPP DDP   EL +ER  P
Sbjct:   13 LMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNP 116          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 52/104 (50.00%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   91 LQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            L  +L  L + PV+GF   + DES++    V+I GPP+TL EGG+F A + FP + P SPPT RF ++MW  N Y +G VCISI HPP DDP   EL +ER  P
Sbjct:   13 LMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNP 116          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 54/108 (50.00%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   79 AILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            A+  L  +   L  NP +G  AG  +E N  E    I GP DT  E G F AIL+FP + P SPP +RF  EM+  N YPDG+VCISI H PGDDP GYE + ER +P
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 112          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 54/108 (50.00%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   79 AILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            A+  L  +   L  NP +G  AG  +E N  E    I GP DT  E G F AIL+FP + P SPP +RF  EM+  N YPDG+VCISI H PGDDP GYE + ER +P
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 112          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 54/108 (50.00%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   79 AILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            A+  L  +   L  NP +G  AG  +E N  E    I GP DT  E G F AIL+FP + P SPP +RF  EM+  N YPDG+VCISI H PGDDP GYE + ER +P
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 112          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 54/108 (50.00%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   79 AILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            A+  L  +   L  NP +G  AG  +E N  E    I GP DT  E G F AIL+FP + P SPP +RF  EM+  N YPDG+VCISI H PGDDP GYE + ER +P
Sbjct:    5 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 112          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.014e-20
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  112 LCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            L + PV+GF   + DE ++    V+I GPP+T  EGG+F A L FP + P SPP  RF ++MW  N Y  G VCISI HPP DDP   EL +ER  P
Sbjct:   20 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNP 116          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.014e-20
Identity = 48/97 (49.48%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  112 LCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            L + PV+GF   + DE ++    V+I GPP+T  EGG+F A L FP + P SPP  RF ++MW  N Y  G VCISI HPP DDP   EL +ER  P
Sbjct:   20 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNP 116          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.942e-20
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   64 MAKAHAILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            M+KA A+  L K+   L +N  DG +AG  +E +       I GP  T  EGG + A L FP + P  PPT++F+ E +  N Y DG VCISI H PGDDP  YE ++ER +P
Sbjct:    1 MSKAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSP 113          
The following BLAST results are available for this feature:
BLAST of CB290738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UB2R2_RABIT5.601e-2250.00Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE5.601e-2250.00Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN5.601e-2250.00Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UB2G2_PONAB5.601e-2250.00Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE5.601e-2250.00Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN5.601e-2250.00Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN5.601e-2250.00Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UB2R1_MOUSE4.014e-2049.48Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN4.014e-2049.48Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC7_SCHPO8.942e-2044.25Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290738 ID=CB290738; Name=CB290738; organism=Citrus sinensis; type=EST; length=403bp
TTCGGGACAAGGATAAATTCCCTCTCGGCTTCTAGACTTCTCTGTTCTCT
CTAATACCTTTCTATGGCGAAGGCTCATGCTATTCTCCTCCTGCAGAAGC
AGCTCATATATCTTTGTAAGAACCCAGTTGATGGATTCTCTGCTGGGGTG
GAGGATGAGAGCAATGTCTGTGAAGGGAGTGTGTCCATTACTGGACCCCC
TGATACTTTAGATGAAGGGGGATTCTTCAATGCCATATTGACTTTTCCTG
ATAATGACCCTGCGAGTCCTCCGACTGTGAGGTTTAAGTCGGAGATGTGG
GGTGCTAATGCTTACCCAGACGGAAAGGTTTGCATTTCAATTCCTCATCC
CCCGGGTGATGATCCATATGGCTATGAGCTTGCAACCGAACGGCGGACTC
CCG
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