CB290738

Overview
NameCB290738
Unique NameCB290738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.796e-19
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   91 LQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYGYELATERRTP 402
            L K+L  L K+   G  AG + E+N+      I GPPDT    G FNA L FP + P SPP + F   +   N YP+G+VCISI H PGDDP  YELA ER +P
Sbjct:    9 LLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSP 112          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.254e-17
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1
Query:  109 YLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYG 372
            +L +NP + F   V +E+N+ E  V + GPPDTL EGG F A + FP   P +PP + F SEMW  N YPDG++CISI H    +  G
Sbjct:   12 HLIENPSENFKISV-NENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQG 98          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.062e-16
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 1
Query:   91 LQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYG 372
            L  +  +L +NP + F   V +E+++ E  V + GPPDTL EGG F A + FP   P +PP + F SEMW  N YPDGK+CISI H    +  G
Sbjct:    6 LMAEYRHLIENPSENFKISV-NENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQG 98          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC_ASFK5 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.998e-16
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  112 LCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPH 348
            L +NP + F   V +E+N+ E  V + GP DT  EGG F A +TFP N P  PP + F SEMW  N YPDG++CISI H
Sbjct:   13 LTENPSEHFKVSV-NENNLTEWDVILKGPSDTFYEGGLFKAKITFPPNYPYEPPKLTFTSEMWHPNIYPDGRLCISILH 90          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.023e-15
Identity = 42/94 (44.68%), Postives = 54/94 (57.45%), Query Frame = 1
Query:   91 LQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYG 372
            L  +  +L +NP + F   V +E+N+ E  V + GP DTL EGG F A + FP N P  PP + F SEMW  N Y DG+VCISI H    +  G
Sbjct:    6 LMAEYRHLTENPSENFKVSV-NENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQG 98          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.078e-15
Identity = 41/87 (47.13%), Postives = 49/87 (56.32%), Query Frame = 1
Query:  112 LCKNPVDGFSAGVEDESNVCEGSVSITGPPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGDDPYG 372
            L  NP + F   V +E N+ E  V + GPPDTL EGG F A + FP   P  PP + F SEMW  N Y DGK+CISI H    +  G
Sbjct:   13 LIVNPSEHFKISV-NEDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQG 98          
BLAST of CB290738 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.810e-11
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   73 AHAILLLQKQLIYLCKNPVDGFSAGVEDESNVCEGSVSITG-PPDTLDEGGFFNAILTFPDNDPASPPTVRFKSEMWGANAYPDGKVCISIPHPPGD 360
            A ++LL Q + +   K  +  F   +ED+SN+   ++ +     D++  GGFF A + FP++ P SPP  RF   ++  N Y DG++CISI H  GD
Sbjct:    8 ASSLLLRQYRELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGD 104          
The following BLAST results are available for this feature:
BLAST of CB290738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UBC7_YEAST5.796e-1948.08Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC_ASFB79.254e-1746.59Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFWA2.062e-1644.68Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFK55.998e-1650.63Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFP41.023e-1544.68Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFM25.078e-1547.13Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC3_YEAST5.810e-1136.08Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290738 ID=CB290738; Name=CB290738; organism=Citrus sinensis; type=EST; length=403bp
TTCGGGACAAGGATAAATTCCCTCTCGGCTTCTAGACTTCTCTGTTCTCT
CTAATACCTTTCTATGGCGAAGGCTCATGCTATTCTCCTCCTGCAGAAGC
AGCTCATATATCTTTGTAAGAACCCAGTTGATGGATTCTCTGCTGGGGTG
GAGGATGAGAGCAATGTCTGTGAAGGGAGTGTGTCCATTACTGGACCCCC
TGATACTTTAGATGAAGGGGGATTCTTCAATGCCATATTGACTTTTCCTG
ATAATGACCCTGCGAGTCCTCCGACTGTGAGGTTTAAGTCGGAGATGTGG
GGTGCTAATGCTTACCCAGACGGAAAGGTTTGCATTTCAATTCCTCATCC
CCCGGGTGATGATCCATATGGCTATGAGCTTGCAACCGAACGGCGGACTC
CCG
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