CB290742

Overview
NameCB290742
Unique NameCB290742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length835
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB290742_ssr54 microsatellite CB290742_ssr54:54..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig199 contig Csv1_Contig199:11..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.397e-15
Identity = 67/199 (33.67%), Postives = 99/199 (49.75%), Query Frame = 3
Query:  138 ATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA-----GGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK--VIDVQI 710
            A+S   ++   A+R Q    + D +VDV+ +S          PR    D+    + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL             L IKGE  A+E+      G  FSS   R+ LP+   K D +KAE+KNGVL +++PK K E +  VI+V++
Sbjct:   25 ASSASRSFNTNAMR-QYDQHSDDRNVDVYRHSF---------PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKV 201          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 60/204 (29.41%), Postives = 96/204 (47.06%), Query Frame = 3
Query:  144 SRKGAYRLQAVRAQAGGENKD---TSVDVHVNSGNQGTQVERRPRRTAL-DISPFGLMDPSF-----PT--RTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGA----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERK 692
            +R    +L    A + GE +D   T V V      +     RR R++   +    G   P+      PT   T+ Q  + M+R+ ++    P +      GQV      KE+++  K+R+++PGL             L IKG+H+AEE  G+          S+  Y+T L LPD+ + + +KAELKNGVL + IP+T+  +K
Sbjct:   31 NRHNPMKLNRFMATSAGEQEDKMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLM----GQV------KEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKK 224          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 53/150 (35.33%), Postives = 76/150 (50.67%), Query Frame = 3
Query:  258 RRPRRTALDISPFG--LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAE--EAGGASFSSYDTRLQL-PDNCEKDKVKAELKNGVLYISIPKTKVERK 692
            RRP R A   + F     DP    +++ ++L  MD L        GR+   G   +R  W+ KE E  + +R DMPGL             LVIKGE   E  E  GA+ + Y  R++L P+    D++KAE+KNGVL + +PK K E++
Sbjct:   69 RRPTRDATMPAFFSDVFRDPFSAPQSLGRLLSLMDDLATPA----GRA---GAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQR 211          
BLAST of CB290742 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 49/153 (32.03%), Postives = 69/153 (45.10%), Query Frame = 3
Query:  312 SFPTRTMRQ--MLDTMDRLLEDTMAFPGRSRAGGGGQVRTP---------------WDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK--VIDVQI 710
            SFP+   R    L  +  +  D+   PG    G G     P               WD +E E+ + +R DMPGL             L+IKGE   E     S   Y +R+ LPD   K D+++AE+KNGVL + +PK K E +  VI V++
Sbjct:   58 SFPSTARRDDIFLRCVGSIFSDSEFEPGSEHDGPGHGQSVPLRVARDRSWRWSGRGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKV 210          
The following BLAST results are available for this feature:
BLAST of CB290742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS22M_PEA3.397e-1533.67Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS26M_ARATH1.578e-1229.4126.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS24M_ORYSJ1.578e-1235.3324.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS22M_SOYBN3.886e-1132.03Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290742 ID=CB290742; Name=CB290742; organism=Citrus sinensis; type=EST; length=835bp
GCTCAAGTGCTCAGAAAACAAAGTGAAAATAAATGGCTGCAACATTATCT
ATCTCATCATCATCACCCTTGGTATCGCGCGAGGCCAGGACCTCAATAGC
TAGGAGAAATGTGGCGCCATGCTCGGTAACCTTACCGGCAACGTCAAGGA
AAGGCGCCTATCGGCTACAAGCCGTGAGAGCTCAGGCTGGTGGGGAGAAC
AAGGATACTTCGGTTGACGTCCATGTTAATTCCGGTAACCAAGGAACCCA
AGTGGAGAGGAGGCCTCGAAGAACGGCTCTCGATATTTCACCTTTCGGTT
TGATGGATCCCTCGTTTCCAACGAGGACAATGCGGCAGATGCTGGACACA
ATGGACCGTCTATTAGAGGATACGATGGCTTTTCCGGGGAGGAGCCGGGC
TGGCGGGGGAGGCCAGGTGAGAACACCGTGGGACATCAAAGAGGAGGAAA
ATGAGATCAAAATGAGATTTGACATGCCTGGACTCTCTAAGGAGGATGTC
AAAGTGTCGGTGGAAGATGAAGTCCTTGTCATTAAAGGAGAGCACAGGGC
AGAAGAAGCTGGAGGTGCAAGTTTTAGCTCTTACGATACTCGTCTCCAGC
TTCCTGATAACTGTGAGAAAGATAAGGTCAAGGCAGAGCTCAAGAATGGT
GTTCTTTACATTTCAATTCCTAAGACAAAGGTGGAGCGCAAGGTCATTGA
TGTTCAGATTCTGTAATTATAATAATGAGTGCCTAGCGAAATGTGTATGT
TGAGGTTTTGTGATCTACATGTCCAGCTTTGTAAGTGTATAAATAAATTG
AGATGCAGAGCTGAAGAATGGTGTTCTTTACATTT
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