CB290746

Overview
NameCB290746
Unique NameCB290746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6079 contig Csv1_Contig6079:148..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290746 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.035e-12
Identity = 63/243 (25.93%), Postives = 109/243 (44.86%), Query Frame = 1
Query:   76 LPHQSLWQLSKKYGPVMLLK--LGRVPLVVISSAEAARDVLKVHDLDCCSRAPLIGSGKFTYNYSDIAFSPYSDYWRELRKISVLEVFSLRRVQSFGFIREEEVALLMNXXXXXXXXXXXXXXXEKMFALTGSIVFRMAFGRRFRGS--NFDNHRFQELVHAVESLVGGFAAAECFPYVGWIIDRLNGYHAKLERVFQELDTLFQQIIDDHLKPAETTKQEHVQQDIIDVMLKIERDQAESHE 792
            LPH+ L  L++ +G   L+   LG  P V+ S  E AR++L        +  PL  S +       I F+P   YWR LR+I+   +F+ RR+ +    R+ +V  +++                 +     + +    FGRRF  S  N +  + +E+V     L+G F  A+  P++   +D L   HA+  R+   + T    II+ H +  E  ++   Q D +DV+L ++ +     E
Sbjct:   98 LPHRKLESLARLHGAKQLMSFSLGCTPAVITSDPEVARELLTSPHF---ANRPLKQSAQQLLFGRAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAMLDDIQKEYHSKGVVRVRRHLQGAALNNIMGSVFGRRFDMSHENEEVKKLREMVDEGFQLLGAFNWADHLPWLR-PLDPLR-IHARCARLVPRVTTFVSNIIEQH-RREEQRRESGDQCDFVDVLLSLQGEDKLDEE 334          
BLAST of CB290746 vs. ExPASy Swiss-Prot
Match: C76A2_SOLME (Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11
Identity = 33/110 (30.00%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   46 VIGNFHQLGELPHQSLWQLSKKYGPVMLLKLGRVPLVVISSAEAARDVLKVHDLDCCSRAPLIGSGKFTYNYSDIAFSPYSDYWRELRKISVLEVFSLRRVQSFGFIREE 375
            + GN  +LG  P++ +  L +KYGPV+ LKLG    +V+ +A+A+ ++ K HD+   +R     +   +Y    +A +PY  +WR  R+I  +E+F  +++     +R +
Sbjct:   44 IFGNMFELGTEPYKKMAVLRQKYGPVLWLKLGSTYTMVVQTAQASEELFKNHDISFANRVIPDVNQAHSYYQGSLAIAPYGPFWRFQRRICTIEMFVHKKISETEPVRRK 153          
BLAST of CB290746 vs. ExPASy Swiss-Prot
Match: C80B2_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Eschscholzia californica GN=CYP80B2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 35/111 (31.53%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   46 VIGNFHQLGELPHQSLWQLSKKYGPVMLLKLGRVPLVVISSAEAARDVLKVHDLDCCSRAPLIGSGKFTYNYSDIAFSPYSDYWRELRKISVLEVFSLRRVQSFGFIREEE 378
            ++GN  QLGE PH    +L++ YG +  LK+G   +VV S++ AA ++LK HD    +R          +  + I +S  ++ W+ LRK+   E+F+ + ++S   +RE++
Sbjct:   38 IVGNLLQLGEKPHAQFAELAQTYGDIFTLKMGTETVVVASTSSAASEILKTHDRILSARYVFQSFRVKGHVENSIVWSDCTETWKNLRKVCRTELFTQKMIESQAHVREKK 148          
BLAST of CB290746 vs. ExPASy Swiss-Prot
Match: C80B1_ESCCA ((S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 35/111 (31.53%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   46 VIGNFHQLGELPHQSLWQLSKKYGPVMLLKLGRVPLVVISSAEAARDVLKVHDLDCCSRAPLIGSGKFTYNYSDIAFSPYSDYWRELRKISVLEVFSLRRVQSFGFIREEE 378
            ++GN  QLGE PH    +L++ YG +  LK+G   +VV S++ AA ++LK HD    +R          +  + I +S  ++ W+ LRK+   E+F+ + ++S   +RE++
Sbjct:   37 IVGNLLQLGEKPHAQFAELAQTYGDIFTLKMGTETVVVASTSSAASEILKTHDRILSARYVFQSFRVKGHVENSIVWSDCTETWKNLRKVCRTELFTQKMIESQAHVREKK 147          
BLAST of CB290746 vs. ExPASy Swiss-Prot
Match: C76A1_SOLME (Cytochrome P450 76A1 (Fragment) OS=Solanum melongena GN=CYP76A1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.547e-11
Identity = 58/252 (23.02%), Postives = 115/252 (45.63%), Query Frame = 1
Query:   52 GNFHQL-GELPHQSLWQLSKKYGPVMLLKLGR-VPLVVISSAEAARDVLKVHDLDCCSRAPLIGSGKFTYNYSDIAFSPYSDYWRELRKISVLEVFSLRRVQSFGFIREEEVALLM----NXXXXXXXXXXXXXXXEKMFALTGSIVFRMAFGRRF-------RGSNFDNHRFQELVHAVESLVGGFAAAECFPYVGWIIDRLNGYHAKLERVFQELDTLFQQIIDDHLKPAETTKQEHVQQDIIDVMLKIE 768
            GN   L G  P++ +  L +KYGP++ LK+G  +  +VI +A +A ++ + HD+    R  +  +    Y    +A +PY +YWR  R+I  +E+F  +R+     IR+E V  ++                      MF  + ++V  M F +         +GS F    F  ++  +E   G    ++ FP +      + G   K+ER   +   + ++ I++ ++  +  ++    +D++DV++  E
Sbjct:    2 GNMFDLAGSAPYKKIACLKEKYGPILWLKIGSSMNTMVIQTANSASELFRNHDVSFSDRPIVDVNLAHNYYKGSMALAPYGNYWRFSRRICTVEMFVHKRINETTNIRQESVDKMLRLDEEKASSSGGGGEGIEVTRYMFLASFNMVGNMIFSKDLVTDPESKQGSEF----FNAMIGIME-WAGVPNISDIFPCLKMF--DVQGLRKKMERDMGKGKEITKKFIEERIEERKKGEKNRSIKDLLDVLIDFE 246          
The following BLAST results are available for this feature:
BLAST of CB290746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 125
Match NameE-valueIdentityDescription
C78A4_PINRA2.035e-1225.93Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C76A2_SOLME1.010e-1130.00Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76... [more]
C80B2_ESCCA1.723e-1131.53(S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS... [more]
C80B1_ESCCA1.723e-1131.53(S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (F... [more]
C76A1_SOLME6.547e-1123.02Cytochrome P450 76A1 (Fragment) OS=Solanum melonge... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290746 ID=CB290746; Name=CB290746; organism=Citrus sinensis; type=EST; length=826bp
GCACAAAACAAGCAGCAGCTTCCACCAAGCCCACCTAAGCTTCCAGTAAT
AGGCAATTTTCACCAACTTGGAGAGTTGCCTCACCAATCTTTGTGGCAAC
TCTCTAAAAAATACGGCCCCGTTATGCTCCTCAAACTTGGTCGTGTGCCT
CTTGTCGTAATCTCCTCCGCTGAGGCAGCAAGGGATGTATTAAAAGTTCA
TGATCTCGATTGTTGCAGCAGAGCACCATTAATAGGCAGTGGGAAGTTTA
CGTACAACTATTCGGATATAGCTTTTTCACCATATAGCGATTACTGGAGG
GAGTTGCGCAAAATAAGTGTCCTCGAGGTATTCAGCTTGAGAAGAGTGCA
GTCATTTGGATTCATCAGGGAAGAGGAAGTTGCCCTGCTTATGAATTCAA
TCTCTGAATCATCATCCTCTGCCTCCCCTGTTGATCTTTCTGAGAAGATG
TTTGCTCTCACTGGAAGTATAGTTTTCAGGATGGCTTTTGGGAGGAGATT
TCGAGGGAGCAATTTCGATAATCATAGATTTCAAGAATTGGTCCATGCCG
TTGAATCTCTGGTGGGGGGATTCGCAGCAGCTGAATGCTTCCCATATGTG
GGTTGGATCATTGATAGGCTCAATGGTTACCATGCAAAGCTCGAGAGAGT
TTTCCAAGAATTGGATACTTTATTCCAACAAATAATCGACGATCATCTCA
AACCTGCTGAGACAACAAAACAAGAACATGTACAACAAGACATCATCGAT
GTGATGCTCAAAATTGAGAGAGATCAAGCTGAATCCCATGAAAGTGAAGC
TTGGCTCACAAAAAATCATATTAAGG
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