CB290747

Overview
NameCB290747
Unique NameCB290747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290747 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.084e-17
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  259 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 522
            +WCV      +  LQA +DYACG G ADC P +   +C++P+ + +H +YA NS++QK+ +  GSC+F G A      P Y  C FPT
Sbjct:   20 SWCVCKTGLSDTVLQATLDYACGNG-ADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGCAFPT 106          
BLAST of CB290747 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -3
Query:  259 TWCVANANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQFPT 522
            +WCV      +  LQ  +DYACG G ADC P     +C++P+ + AH +YA NS++QK+ + + SC+F G A + T  P Y  C FP+
Sbjct:   20 SWCVCKTGLSDSVLQKTLDYACGNG-ADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGCAFPS 106          
BLAST of CB290747 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.606e-13
Identity = 37/69 (53.62%), Postives = 42/69 (60.87%), Query Frame = -3
Query:  286 EKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAP 492
            E+ LQ AIDYACG G ADC  IQ    CY PNT++ H   A NSYYQK+     +CDF GAA   T  P
Sbjct:   29 EQVLQKAIDYACGNG-ADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFNGAASPSTTPP 96          
BLAST of CB290747 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.359e-12
Identity = 51/165 (30.91%), Postives = 78/165 (47.27%), Query Frame = -3
Query:  265 LNVYLFALFNENQK--QGPTSERNYGLFYPNEQTVYDSPFVSTSGNSSSTPAANKSKTQXXXXXXXXXXXXXXXXGQTWCVA--NANAGEKKLQAAIDYACGEGGADCRPIQEGATCYDPNTLEAHASYAFNSYYQKQVRKAGSCDFGGAAYVVTQAPKYGKCQF 747
            ++ YLF L +E+ K  Q    ER++G+FY + Q  Y    +S    +   PA +                      + WC+   NAN  + +L  ++ YAC    ADC  +  G++C + N L  + SYAFNSYYQ   +   +C F G + V T+ P  G C+F
Sbjct:  307 MDAYLFGLIDEDAKSIQPGNFERHWGIFYIDGQPKYQ---LSLGSGNGLIPAKD-----------------VHYLAKKWCILAPNANLQDPQLGPSVSYACDH--ADCTSLGYGSSCGNLN-LAQNVSYAFNSYYQVSNQLDSACKFPGLSIVSTRDPSVGSCKF 448          
The following BLAST results are available for this feature:
BLAST of CB290747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
E13L2_ARATH4.084e-1742.05Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L3_ARATH2.027e-1640.91Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L4_ARATH1.606e-1353.62Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
E135_ARATH1.359e-1230.91Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dc12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dc12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290747 ID=CB290747; Name=CB290747; organism=Citrus sinensis; type=EST; length=761bp
TTTTTTTTTTTTTTTTTATCCCATAAAATAATGGACTACTTTTATGATCA
TTAGAATAAATACAATAAGGATTTGATCCTCTTGACACTAGAGTCAAACC
AACTGATAACAACCCCACCCACTCAGCGTAAAATTTAAATACAAGGGAGA
AAAATTAATGTTCCAATCCTCTAAATCTATCAAAAAAAATCATCACCAAT
CGTAAGCCGCGACCACAAATCAGCTAATGCTCCCTATTTTTTTTCCCACT
CAATAGCCAGTTGGGAACTGGCATTTTCCATATTTAGGAGCCTGCGTGAC
CACGTAGGCCGCACCACCAAAATCACAAGATCCAGCCTTACGCACTTGCT
TCTGATAATAACTATTGAAGGCATACGATGCATGGGCTTCTAACGTGTTA
GGATCGTAACACGTGGCGCCCTCTTGAATCGGTCGGCAATCAGCGCCTCC
CTCGCCACAGGCATAATCAATTGCGGCTTGCAGCTTTTTCTCACCAGCAT
TCGCGTTAGCCACGCACCAAGTCTGTCCCGCCGCCGAGGGCGACACGTCA
CCACCTCCTCCTCCGCTCACCGGAACTTGAGTCTTGCTCTTATTGGCTGC
CGGCGTTGAGCTTGAGTTCCCACTAGTTGACACAAACGGCGAGTCGTACA
CCGTCTGTTCGTTGGGATAAAACAACCCGTAATTCCTTTCCGATGTGGGA
CCCTGTTTTTGATTCTCATTGAACAAAGCGAAGAGGTAAACGTTAAGTGG
GTCCTTTGGTC
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