CB290756

Overview
NameCB290756
Unique NameCB290756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: Y2161_MYCVP (Uncharacterized oxidoreductase Mvan_2161 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_2161 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.027e-24
Identity = 66/191 (34.55%), Postives = 95/191 (49.74%), Query Frame = 1
Query:  193 VLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDEL 765
            +LN    +P IGLG  +       ++V  AL  GYR ID A  YGNE  VG A+    K  + R ++F+T+ L          ++ +R SL+ LG+ Y+DLYL+HWP  S   + D+                     W  +  L + GL R+IGVSNF    + +++  +   PAVNQ+ELHP   Q EL
Sbjct:   11 ILNDDNTMPVIGLGVGELSDAEAEQSVLAALEAGYRLIDTAAAYGNEAAVGRAIA---KSGVPRGELFVTTKLATDDLGFQSSQDALRASLERLGLDYVDLYLIHWPAGSQGTYVDS---------------------WGGLMKLKELGLTRSIGVSNFHAQHLDDIIGLSFFTPAVNQIELHPLLNQAEL 177          
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: DKGA_YERPE (2,5-diketo-D-gluconic acid reductase A OS=Yersinia pestis GN=dkgA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.028e-23
Identity = 67/190 (35.26%), Postives = 102/190 (53.68%), Query Frame = 1
Query:  196 LNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDEL 765
            L  G  +P +GLG WQ   +    AV  AL VGYR+ID A +Y NE  VG+AL  A   ++ R+++F+T+ L+   +  +  +  +  SL+ L + Y+DLYL+HWP           DP            +    AW+ +  L + GL+R+IGV NF +  ++ L+    I P VNQ+ELHP  +Q +L
Sbjct:    9 LYDGRLMPQLGLGVWQASIQETELAVSKALEVGYRSIDTAAIYKNEEGVGKALKAA---AVARDELFITTKLW--NDDQHNPQQALETSLQKLQLDYVDLYLIHWP-----------DPKQ----------DHYVSAWRELVTLKEQGLIRSIGVCNFHIPHLQRLIDETGIAPTVNQIELHPLLQQRQL 172          
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: Y1918_MYCSJ (Uncharacterized oxidoreductase Mjls_1918 OS=Mycobacterium sp. (strain JLS) GN=Mjls_1918 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.343e-23
Identity = 63/190 (33.16%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  196 LNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDEL 765
            LN G  IP +GLG  +        +V  AL  GYR ID A +YGNE  VG A++ +    + RE++++T+ L  +       ++  R SL+ LG+ Y+DLYL+HWP   A   G   D                  +W  +      G+ R+IGV NF    +  ++  +   PA+NQ+ELHP   Q EL
Sbjct:   16 LNDGHSIPVLGLGVGELSESEAERSVAAALEAGYRLIDTAAVYGNEAAVGRAVNAS---GIPREEIYVTTKLAVADQGFGTSQDAARASLERLGLDYVDLYLIHWP---AGDHGKYID------------------SWGGLMKAKQDGVARSIGVCNFNAEHLSNIIDLSFFTPAINQIELHPLLNQAEL 181          
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: Y1984_MYCSK (Uncharacterized oxidoreductase Mkms_1984 OS=Mycobacterium sp. (strain KMS) GN=Mkms_1984 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.754e-23
Identity = 63/190 (33.16%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  196 LNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDEL 765
            LN G  IP +GLG  +        +V  AL  GYR ID A +YGNE  VG A++ +    + RE++++T+ L  +       ++  R SL+ LG+ Y+DLYL+HWP   A   G   D                  +W  +      G+ R+IGV NF    +  ++  +   PA+NQ+ELHP   Q EL
Sbjct:   16 LNDGHSIPVLGLGVGELSEAEAERSVAAALEAGYRLIDTAAVYGNEAAVGRAVNAS---GIPREEIYVTTKLAVADQGFGTSQDAARASLERLGLDYVDLYLIHWP---AGDHGKYID------------------SWGGLMKAKQDGVARSIGVCNFNAEHLSNIIDLSFFTPAINQIELHPLLNQAEL 181          
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: Y1938_MYCSS (Uncharacterized oxidoreductase Mmcs_1938 OS=Mycobacterium sp. (strain MCS) GN=Mmcs_1938 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.754e-23
Identity = 63/190 (33.16%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  196 LNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDEL 765
            LN G  IP +GLG  +        +V  AL  GYR ID A +YGNE  VG A++ +    + RE++++T+ L  +       ++  R SL+ LG+ Y+DLYL+HWP   A   G   D                  +W  +      G+ R+IGV NF    +  ++  +   PA+NQ+ELHP   Q EL
Sbjct:   16 LNDGHSIPVLGLGVGELSEAEAERSVAAALEAGYRLIDTAAVYGNEAAVGRAVNAS---GIPREEIYVTTKLAVADQGFGTSQDAARASLERLGLDYVDLYLIHWP---AGDHGKYID------------------SWGGLMKAKQDGVARSIGVCNFNAEHLSNIIDLSFFTPAINQIELHPLLNQAEL 181          
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: AK1CL_RAT (Aldo-keto reductase family 1 member C21 OS=Rattus norvegicus GN=Akr1c21 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.754e-23
Identity = 72/199 (36.18%), Postives = 104/199 (52.26%), Query Frame = 1
Query:  196 LNTGAKIPAIGLGTWQTGG---ELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAF-KGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLK--FAKIMPAVNQVELHPFWRQDELVKF 774
            LN G  IP +G GT            E  K A+  G+ + D A +Y  E  VGEA+ E    G+ +RED+F TS L+C+      + + +  SLK L + Y+DLYL+H+P   A   GD   P  + G      ++ L   W+AME   D+GL ++IGVSNF   Q++++L     K  P  NQVE H +  Q +L+ F
Sbjct:   10 LNDGHFIPVLGFGTAMPSELPKSKAKEVTKIAIDAGFHHFDSAFVYNTEDHVGEAIREKIANGTTRREDIFYTSKLWCTSLHPELVRSSLECSLKKLQLDYVDLYLIHFP--MALKPGDENFPVDEHGKLLFDTVD-LCATWEAMEKCKDAGLAKSIGVSNFNRRQLEKILNKPGLKYKPVCNQVECHLYLNQMKLLDF 205          
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: DKGA_CORSC (2,5-diketo-D-gluconic acid reductase A OS=Corynebacterium sp. (strain ATCC 31090) GN=dkgA PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.290e-23
Identity = 66/191 (34.55%), Postives = 102/191 (53.40%), Query Frame = 1
Query:  193 VLNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDEL 765
            VLN G  IP +G G ++        AV+ AL VGYR+ID A +YGNE  VG A+  +    + R+D+F+T+ L+   +  ++    +  SL  L +  +DLYL+HWP  +A  +                       AW+ M  L  +GL R+IGVSN  V  ++ ++    ++PAVNQ+ELHP ++Q E+
Sbjct:    7 VLNDGNSIPQLGYGVFKVPPADTQRAVEEALEVGYRHIDTAAIYGNEEGVGAAIAAS---GIARDDLFITTKLWNDRHDGDEPAAAIAESLAKLALDQVDLYLVHWPTPAADNY---------------------VHAWEKMIELRAAGLTRSIGVSNHLVPHLERIVAATGVVPAVNQIELHPAYQQREI 173          
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: DIDH_RAT (3-alpha-hydroxysteroid dehydrogenase OS=Rattus norvegicus GN=Akr1c9 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.664e-23
Identity = 67/199 (33.67%), Postives = 111/199 (55.78%), Query Frame = 1
Query:  196 LNTGAKIPAIGLGTW---QTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFK-GSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLK--FAKIMPAVNQVELHPFWRQDELVKF 774
            LN G  IP +G GT    +   +  ++A K A+  G+R+ D A+LY  E EVG+A+    + G++KRED+F TS L+ + +    +   +  +LK+  + Y+DLY++H+P   A   GD   P  + G    + ++ +   W+AME   D+GL ++IGVSNF   Q++ +L     K  P  NQVE H +  Q +++ +
Sbjct:   10 LNDGNFIPVLGFGTTVPEKVAKDEVIKATKIAIDNGFRHFDSAYLYEVEEEVGQAIRSKIEDGTVKREDIFYTSKLWSTFHRPELVRTCLEKTLKSTQLDYVDLYIIHFP--MALQPGDIFFPRDEHGKLLFETVD-ICDTWEAMEKCKDAGLAKSIGVSNFNCRQLERILNKPGLKYKPVCNQVECHLYLNQSKMLDY 205          
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: AK1CD_MESAU (Aldo-keto reductase family 1 member C13 OS=Mesocricetus auratus GN=AKR1C13 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.137e-22
Identity = 67/197 (34.01%), Postives = 106/197 (53.81%), Query Frame = 1
Query:  205 GAKIPAIGLGTW---QTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFK-GSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGD-ATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLK--FAKIMPAVNQVELHPFWRQDELVKF 774
            G  IPA+G GT+   +      +EA   A+ VGYR+ID A+ Y  E E+G+A+    K G +KRED+F+T+ L+C+      +   +      L + ++DL++MH+P    +G  D   D   K   +   F       W+A+E   D+GLV++IGVSNF + Q++ +L     K  P  NQVE H +  Q +L+ +
Sbjct:   13 GHCIPALGFGTYKPIEVPKSKAMEAANLAIGVGYRHIDTAYAYQIEEEIGQAIQSNIKAGIVKREDMFITTKLWCTCFQPELVRPSLEKXXXKLQLEHVDLFIMHYPVPMKAGDNDFPLDEQGKLLLDTVDFC----ATWEALEKXXDAGLVKSIGVSNFNMRQLERILNKPGLKYKPVCNQVECHVYNNQSKLLDY 205          
BLAST of CB290756 vs. ExPASy Swiss-Prot
Match: Y2407_MYCS2 (Uncharacterized oxidoreductase MSMEG_2407 OS=Mycobacterium smegmatis GN=MSMEG_2407 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.939e-22
Identity = 59/190 (31.05%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  196 LNTGAKIPAIGLGTWQTGGELCVEAVKTALSVGYRNIDCAHLYGNEIEVGEALDEAFKGSLKREDVFLTSTLYCSMNSINKIENYVRVSLKNLGVSYLDLYLMHWPECSASGFGDATDPPSKSGSERRQFLNRLKKAWKAMEGLVDSGLVRAIGVSNFGVSQIKELLKFAKIMPAVNQVELHPFWRQDEL 765
            LN    +P +G+G  +        +V  AL  GYR ID A  YGNE  VG A+  +    + R+++++T+ L          +   R SL+ LG+ Y+DLYL+HWP    S + D+                     W  +  + + G+ R+IGV NFG   ++ ++      PAVNQ+ELHP   Q  L
Sbjct:   16 LNDDNTLPVVGIGVGELSDSEAERSVSAALEAGYRLIDTAAAYGNEAAVGRAIAAS---GIPRDEIYVTTKLATPDQGFTSSQAAARASLERLGLDYVDLYLIHWPGGDTSKYVDS---------------------WGGLMKVKEDGIARSIGVCNFGAEDLETIVSLTYFTPAVNQIELHPLLNQAAL 181          
The following BLAST results are available for this feature:
BLAST of CB290756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
Y2161_MYCVP6.027e-2434.55Uncharacterized oxidoreductase Mvan_2161 OS=Mycoba... [more]
DKGA_YERPE1.028e-2335.262,5-diketo-D-gluconic acid reductase A OS=Yersinia... [more]
Y1918_MYCSJ1.343e-2333.16Uncharacterized oxidoreductase Mjls_1918 OS=Mycoba... [more]
Y1984_MYCSK1.754e-2333.16Uncharacterized oxidoreductase Mkms_1984 OS=Mycoba... [more]
Y1938_MYCSS1.754e-2333.16Uncharacterized oxidoreductase Mmcs_1938 OS=Mycoba... [more]
AK1CL_RAT1.754e-2336.18Aldo-keto reductase family 1 member C21 OS=Rattus ... [more]
DKGA_CORSC2.290e-2334.552,5-diketo-D-gluconic acid reductase A OS=Coryneba... [more]
DIDH_RAT6.664e-2333.673-alpha-hydroxysteroid dehydrogenase OS=Rattus nor... [more]
AK1CD_MESAU1.137e-2234.01Aldo-keto reductase family 1 member C13 OS=Mesocri... [more]
Y2407_MYCS21.939e-2231.05Uncharacterized oxidoreductase MSMEG_2407 OS=Mycob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01dd05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290756 ID=CB290756; Name=CB290756; organism=Citrus sinensis; type=EST; length=775bp
GCACGTGGGACAAACACTTGGCCTGCACTTTTTAATACTGTCAAAAGCTT
TGAAGTGAAAAAAAAAATGCAAACTCTCGTCTGGGTTTTGTGATTTTTGG
TTTGATTTGGTATCTGTGTTTTTGATCTTTTTTTCTTTTTGTTCATTTGG
GAAATGAAAGGGAGATTTGCTAGTCCAGGGAGTAGTTACTTTGTGTTGAA
CACAGGAGCTAAAATTCCAGCCATTGGATTGGGAACATGGCAAACTGGGG
GAGAGCTTTGTGTTGAGGCTGTGAAAACAGCATTGTCAGTGGGTTACCGT
AATATAGATTGTGCTCATCTTTATGGGAATGAGATTGAAGTTGGGGAAGC
ACTTGATGAAGCTTTCAAAGGATCTCTCAAGAGAGAGGATGTGTTCCTGA
CCTCAACTCTCTATTGTAGTATGAATTCAATCAATAAGATTGAAAATTAC
GTCAGAGTGTCTCTTAAGAATCTTGGAGTTTCATATTTGGATCTCTATTT
AATGCATTGGCCTGAGTGCTCTGCTTCTGGTTTTGGGGATGCTACTGATC
CTCCTTCTAAGTCCGGGAGTGAGCGTAGGCAGTTTTTAAATCGCTTGAAG
AAAGCATGGAAAGCCATGGAAGGTCTCGTGGACTCGGGATTGGTCAGAGC
TATTGGTGTCAGTAATTTTGGGGTTTCACAGATCAAAGAGTTGCTTAAAT
TTGCCAAAATTATGCCTGCGGTGAATCAGGTGGAGTTGCATCCTTTTTGG
AGGCAGGATGAACTAGTAAAATTCT
back to top