CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_AQUAE (3-isopropylmalate dehydratase large subunit OS=Aquifex aeolicus GN=leuC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.675e-32
Identity = 82/211 (38.86%), Postives = 115/211 (54.50%), Query Frame = -2
Query:  264 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVF---LASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 881
            +  D  T +Y++ +   P++   SD  A + S Y +D S++EPLVA P+ P N     E   + ID+ +IGSCT G+ ED   AAKVF   L  GKKV   V   ++PA++ ++             +    IF EAGC    S +CG CLGG     A   E   C+ST+NRNFPGRMGH + + YLA+P   AASA+ G +  P E ++
Sbjct:  227 ISPDEKTIEYVKQRAKRPWKVYQSDPDAEYHSVYEWDASQIEPLVAWPYLPSNVHPVSESTHITIDQAFIGSCTNGRIEDLRVAAKVFEAALKQGKKVHPYVRCIVIPASKAIYKQALK--------EGLIDIFMEAGCVVSTS-TCGPCLGGHMGVLA---EGERCISTSNRNFPGRMGHPKSESYLANPAVVAASAIMGRIAHPDEVVK 425          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBA (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=leuC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.412e-32
Identity = 82/202 (40.59%), Postives = 110/202 (54.46%), Query Frame = -2
Query:  279 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 878
            P D  T +YL++ T   ++   +DE A +      D+S L+P V+ PH PDN         V ID+V IGSCT G+  D   A  +    GKKVK  +   ++P TQK+++            +   +   EAG    ++P+CG CLGG     A+      CVSTTNRNF GRMGH E ++YLASP  AAASALTG +TDP
Sbjct:  229 PVDDKTVEYLKEHTEKEWKIYEADEDAEYDEVIEIDLSTLKPTVSFPHLPDNTRTIDNANRVNIDQVVIGSCTNGRISDLRIARGIL--KGKKVKKGIRCIVIPGTQKIYLQALE--------EGIIKDLIEAGA-VVSTPTCGPCLGGHMGILAKGER---CVSTTNRNFVGRMGHVESEVYLASPAVAAASALTGKITDP 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_THEMA (3-isopropylmalate dehydratase large subunit 2 OS=Thermotoga maritima GN=leuC2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.412e-32
Identity = 81/204 (39.71%), Postives = 110/204 (53.92%), Query Frame = -2
Query:  273 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD--VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 878
            P D  T  Y E +  +  E +Y DE A ++ E   D+S+LEP VA P  P N     E +   +KID+  IGSCT G+ ED   AA++         V   ++P +QKV+             +    IF +AGC   ++P+CG CLGG     A   E  V +STTNRNF GRMGH   +++LASP  AAASA+ GY+ DPR+
Sbjct:  226 PVDEITIAY-ERERGIEVEEMYPDEDAKYVREVEMDLSELEPQVAYPFLPSNAKDVSEAEKERIKIDQAVIGSCTNGRIEDLRLAAQILKGRTVSPDVRCIIIPGSQKVYKQALK--------EGLIDIFIDAGCAV-STPTCGPCLGGHMGVLA---EGEVAISTTNRNFVGRMGHPNSKVFLASPAVAAASAIKGYIADPRK 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_DESHY (3-isopropylmalate dehydratase large subunit OS=Desulfitobacterium hafniense (strain Y51) GN=leuC PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.651e-31
Identity = 75/205 (36.59%), Postives = 110/205 (53.66%), Query Frame = -2
Query:  267 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 881
            +P D  T  Y+ ++   PY+  +SD  A ++  Y +D++ +   VA PH P+N     E K +KID+V IGSCT G+ ED   AA++         V   ++P TQ ++             +    IF +AG    ++P+CG CLGG     A+       +STTNRNF GRMGH E ++YL+ P  AAASA+TG ++ P E L
Sbjct:  229 IPPDEKTLAYVNERAKRPYKVYHSDPDAQYVEVYEWDVADIPLQVAFPHLPENAKPVSEGKGIKIDQVVIGSCTNGRLEDMQVAAQILKGQKVHGDVRLIVIPGTQDIYKQAMQ--------EGLIDIFIDAGA-VVSTPTCGPCLGGYMGILAKGER---ALSTTNRNFVGRMGHPESEVYLSGPAVAAASAVTGEISHPEEVL 421          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CALS8 (3-isopropylmalate dehydratase large subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=leuC PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.651e-31
Identity = 81/203 (39.90%), Postives = 114/203 (56.16%), Query Frame = -2
Query:  273 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 872
            D  T +Y++  ++ PY+   +DE A +   Y  DISK+ P VA PH P+N     E  + + ID+V IGSCT G+ ED   AAK+    G+KVK  +   + PATQ ++             +   +IF +AGC   ++P+CG CLGG     A   E    ++TTNRNF GRMGH   ++YL+SP  AAASA+ GY+  P E
Sbjct:  233 DEKTIEYVKQHSTKPYKIFKADEDAEYSEVYEIDISKIRPTVAFPHLPENTKTIDEITEKIYIDQVVIGSCTNGRIEDLRIAAKIL--KGRKVKKGLRCIIFPATQNIYKQALK--------EGLIEIFIDAGC-VVSTPTCGPCLGGHMGILA---EGERALATTNRNFVGRMGHPNSEVYLSSPAIAAASAVLGYIGSPEE 421          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_HYDS0 (3-isopropylmalate dehydratase large subunit OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=leuC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.816e-31
Identity = 78/205 (38.05%), Postives = 111/205 (54.15%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPT--FLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D  T +Y+E +   PY+   SD+ A ++  Y +D S +EP+VA P+ P N     E   + ID+ +IGSCT G+ ED   AA +    GKKV   T   ++PA++ V++            +    IF EAGC    S +CG CLGG     A+      C+ST+NRNFPGRMGH + + YLA+P   AASA+ G +  P E
Sbjct:  227 ISPDEKTIEYVEKRAKKPYKIYQSDKDAHYVEVYEWDASSIEPMVAWPYLPSNVHPVSESTHITIDQAFIGSCTNGRIEDLRIAASIL--KGKKVHPYTRCVVIPASKNVYLQAL--------HEGLVDIFIEAGCAVSTS-TCGPCLGGHMGILAKGER---CISTSNRNFPGRMGHPQSEAYLANPAVVAASAVLGRIAHPEE 417          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBB (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=leuC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.816e-31
Identity = 80/202 (39.60%), Postives = 109/202 (53.96%), Query Frame = -2
Query:  279 PADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDP 878
            P D  T +YL++ T   +E   +DE A +      +++ L P V+ PH PDN        D+ ID+V IGSCT G+  D   A  +    GKKVK  +   ++P TQ +++            +   +   EAG    ++P+CG CLGG     A+      CVSTTNRNF GRMGH E ++YLASP  AAASALTG +TDP
Sbjct:  229 PVDDKTVEYLKEHTKKEWEVYKADEDAEYDEVIEIELNTLRPTVSFPHLPDNTRTIDNVGDIDIDQVVIGSCTNGRISDLRIARDIL--KGKKVKKGIRCIVIPGTQNIYLQALE--------EGIIKDLIEAGV-VVSTPTCGPCLGGHMGILAKGER---CVSTTNRNFVGRMGHVESEVYLASPAVAAASALTGKITDP 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_ARCFU (3-isopropylmalate dehydratase large subunit 2 OS=Archaeoglobus fulgidus GN=leuC2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.816e-31
Identity = 78/189 (41.27%), Postives = 113/189 (59.79%), Query Frame = -2
Query:  267 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 827
            +  V +DE A +  E   D+S L P+V+KPH+ DN A   E +  ++++VYIG+CT G+  D   AA++    G+KVK  V   +VPA+++V++            K   ++F EAG     +P CG C+G  +   A   +  VC+ST NRNF GRMG+   +I+LASP TAAASA+ GY+ DPREFL
Sbjct:  242 FREVKADEDAEYEKEIYMDVSSLVPVVSKPHNVDNVAEISEVEGTEVNQVYIGTCTNGRLSDLEVAARIL--KGRKVKEGVRLIVVPASRRVYLQAL--------DKGLIRVFVEAG-GMVLNPGCGPCVGIHQGILA---DGEVCISTQNRNFKGRMGNPNAEIFLASPATAAASAVKGYIADPREFL 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SULTO (3-isopropylmalate dehydratase large subunit OS=Sulfolobus tokodaii GN=leuC PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.194e-31
Identity = 83/203 (40.89%), Postives = 109/203 (53.69%), Query Frame = -2
Query:  270 DGTTFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 872
            D  T  Y+  KT+  YEP  V  DE A ++ EY  D+ KLEPLVA PHS DN     E + + +D+V+IGSCT G+  DF  AAK+    GK+VK     +PA+  ++     L           +    AGC      +CG CLGG    +         VST++RNF GRMG  + ++YLA P  AAASAL G +TDPR F
Sbjct:  228 DEETVNYI--KTNRGYEPNIVRPDEGAKYVDEYTIDLGKLEPLVAAPHSVDNVKTVNEVEGLDVDQVFIGSCTNGRISDFEIAAKIL--KGKRVKSRCIAIPASYDLFKKAMELGY--------IETLVNAGCIVTYG-TCGPCLGG---HFGVAGPGETIVSTSSRNFKGRMGSNDSKVYLAGPAVAAASALQGKITDPRRF 414          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ANATD (3-isopropylmalate dehydratase large subunit OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=leuC PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.070e-30
Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = -2
Query:  273 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 872
            D  T +Y++  ++ PY+   +DE A +   +  DISK+ P VA PH P+N     E  + + ID+V IGSCT G+ ED   AAK+    G+KVK  +   + PATQ ++             +   +IF +AGC   ++P+CG CLGG     A   + +   +TTNRNF GRMGH   ++YL+SP  AAASA+ GY+  P E
Sbjct:  233 DEKTIEYVKQHSTKPYKIFKADEDAEYSQVFEIDISKIRPTVAFPHLPENTKTIDEITEKIYIDQVVIGSCTNGRIEDLRIAAKIL--KGRKVKKGLRCIIFPATQNIYKQALK--------EGFIEIFIDAGC-VVSTPTCGPCLGGHMGILADGEKAL---ATTNRNFVGRMGHPNSEVYLSSPAIAAASAVLGYIGSPEE 421          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_AQUAE5.675e-3238.863-isopropylmalate dehydratase large subunit OS=Aqu... [more]
LEUC_CLOBA7.412e-3240.593-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC2_THEMA7.412e-3239.713-isopropylmalate dehydratase large subunit 2 OS=T... [more]
LEUC_DESHY1.651e-3136.593-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_CALS81.651e-3139.903-isopropylmalate dehydratase large subunit OS=Cal... [more]
LEUC_HYDS02.816e-3138.053-isopropylmalate dehydratase large subunit OS=Hyd... [more]
LEUC_CLOBB2.816e-3139.603-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC2_ARCFU2.816e-3141.273-isopropylmalate dehydratase large subunit 2 OS=A... [more]
LEUC_SULTO8.194e-3140.893-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_ANATD1.070e-3038.923-isopropylmalate dehydratase large subunit OS=Ana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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