CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BRUC2 (3-isopropylmalate dehydratase large subunit OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 83/251 (33.07%), Postives = 111/251 (44.22%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF+Y++ +   P           ++ ++SDE A F      D   L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV    GKKV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R
Sbjct:  236 IAPDETTFEYIKGRPRAPQGETLEQAINYWKTLHSDEGAHFDKIVTLDAGSLPPIVSWGSSPEDVVSVTGVVPNPDDIADETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAAAKV--VEGKKV-APT------------VNAMIVPGSGLVKEQAEAEGLHKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BRUAB (3-isopropylmalate dehydratase large subunit OS=Brucella abortus GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 83/251 (33.07%), Postives = 111/251 (44.22%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF+Y++ +   P           ++ ++SDE A F      D   L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV    GKKV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R
Sbjct:  236 IAPDETTFEYIKGRPRAPQGETLEQAINYWKTLHSDEGAHFDKIVTLDAGSLPPIVSWGSSPEDVVSVTGVVPNPDDIADETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAAAKV--VEGKKV-APT------------VNAMIVPGSGLVKEQAEAEGLHKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BRUA2 (3-isopropylmalate dehydratase large subunit OS=Brucella abortus (strain 2308) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 83/251 (33.07%), Postives = 111/251 (44.22%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF+Y++ +   P           ++ ++SDE A F      D   L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV    GKKV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R
Sbjct:  236 IAPDETTFEYIKGRPRAPQGETLEQAINYWKTLHSDEGAHFDKIVTLDAGSLPPIVSWGSSPEDVVSVTGVVPNPDDIADETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAAAKV--VEGKKV-APT------------VNAMIVPGSGLVKEQAEAEGLHKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_BRUA1 (3-isopropylmalate dehydratase large subunit OS=Brucella abortus (strain S19) GN=leuC PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 83/251 (33.07%), Postives = 111/251 (44.22%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF+Y++ +   P           ++ ++SDE A F      D   L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  AAAKV    GKKV  PT            V  + VPGSG        +   +IF EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R
Sbjct:  236 IAPDETTFEYIKGRPRAPQGETLEQAINYWKTLHSDEGAHFDKIVTLDAGSLPPIVSWGSSPEDVVSVTGVVPNPDDIADETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAAAKV--VEGKKV-APT------------VNAMIVPGSGLVKEQAEAEGLHKIFIEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_NITWN (3-isopropylmalate dehydratase large subunit OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=leuC PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19
Identity = 79/253 (31.23%), Postives = 112/253 (44.27%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSP-----------DNRALARECK--------------------DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D T +++L+ +   P           +E + SD+ A F  E R D +KL P+V    SP           D  A+  E K                    D+++DRV+IGSCT G+ ED  AAAK+  A G+ V               +V  + VPGSG        +   +IF  AG +    P C  CL    D   ++     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  235 IAPDETAYEFLKGRPKAPKGADWDAALRYWETLRSDDGAHFDHEIRLDAAKLPPIVTWGTSPEDVIAVTGKVPDPAAIEDEAKRLSKERALHYMGLLPGTKITDIRLDRVFIGSCTNGRIEDLRAAAKI--AEGRTVN-------------GNVSAMVVPGSGLVKEQAEAEGLDKIFTRAGFEW-REPGCSMCLAMNPD---KLKPDERCASTSNRNFEGRQGFK-GRTHLVSPSMAAAAAIAGHFVDIREW 467          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RHISN (3-isopropylmalate dehydratase large subunit OS=Rhizobium sp. (strain NGR234) GN=leuC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 80/253 (31.62%), Postives = 112/253 (44.27%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D TTF Y++DK   P           ++ +++DE A +      D + L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED  A AKV    G+KV                V  + VPGSG        +   +IF+EAG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  236 IAPDETTFDYIKDKPRAPKGKAWDMALDYWKTLHTDEGAHYDRIVVLDAADLPPIVSWGSSPEDVISVQGAVPNPDDIQEETKRASKWRALDYMGLKPGTKITDIAVDRVFIGSCTNGRIEDLRAVAKV--VEGRKVA-------------STVSAMIVPGSGLVKEQAEAEGLDKIFKEAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAVAGHFVDIREW 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_AGRVS (3-isopropylmalate dehydratase large subunit OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=leuC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.397e-19
Identity = 78/253 (30.83%), Postives = 111/253 (43.87%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D  TF+Y++ K   P           ++ +++DE A F      D + L P+V+   SP++                        RAL         +  D+ IDRV+IGSCT G+ ED  AAA V                  +KV   V  + VPGSG        +   +IF +AGC+    P C  CL    D   R+     C ST+NRNF GR G+K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  236 IAPDEKTFEYIKGKPRAPKGEELEMALQYWKTLHTDEGAHFDRTVVLDAANLPPIVSWGSSPEDVISVQGVVPNPDDIADENKRTSKWRALDYMGLKPGTKITDITIDRVFIGSCTNGRIEDLRAAAAVL---------------KDRKVASTVSAMVVPGSGLVKEQAEAEGLDKIFLDAGCEW-REPGCSMCLAMNDD---RLKPEERCASTSNRNFEGRQGYK-GRTHLVSPAMAAAAAIAGHFVDIREW 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RHOP2 (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain HaA2) GN=leuC PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.603e-18
Identity = 81/253 (32.02%), Postives = 111/253 (43.87%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D   + YL+ +   P           ++ + SDE A F  E R D + L P+V    SP++                        RALA        +  D+KIDR++IGSCT G+ ED  AAAKV  A GK V               +V  + VPGSG        +   +IF +AG +    P C  CL    D  A       C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D R++
Sbjct:  237 IAPDEKAYAYLKGRPMAPTGAHWDAAMRYWDTLRSDEGAHFDHELRLDAAALPPIVTWGTSPEDVISVTGKVPNPADIADEAKRLSKERALAYMGLTPGTKITDIKIDRMFIGSCTNGRIEDLRAAAKV--AEGKTVNA-------------NVNAIIVPGSGLVKEQAEAEGLDKIFVKAGFEW-REPGCSMCLAMNPDKLAPEER---CASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIRDW 469          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPS (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisB5) GN=leuC PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.094e-18
Identity = 82/253 (32.41%), Postives = 110/253 (43.48%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D   + YL+ +   P           ++ + SDE A F  E R D + L P+V    SP++                        RALA           D+KIDR++IGSCT G+ ED  AAAKV  A GK V               +V  + VPGSG        +   +IF +AG +    P C  CL    D  A       C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  237 IAPDEKAYAYLKGRPMAPTGANWDAAMRYWDTLRSDEGAHFDHELRLDAAALPPIVTWGTSPEDVISITGRVPNPADIADEAKRLSKERALAYMGLTPGTRITDIKIDRMFIGSCTNGRIEDLRAAAKV--AEGKTVN-------------GNVSAMIVPGSGLVKEQAEAEGLDKIFVKAGFEW-REPGCSMCLAMNPDKLAPEER---CASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 469          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RHOP5 (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisA53) GN=leuC PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.734e-18
Identity = 78/224 (34.82%), Postives = 102/224 (45.54%), Query Frame = -2
Query:  270 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RALA-------RECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 827
            ++ + SDE A F  E R D + L P+V    SP++                        RALA        +  D+KIDR++IGSCT G+ ED  AAAKV  A GK V               +V  + VPGSG        +   +IF  AG +    P C  CL    D  A       C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  266 WQTLRSDEGAHFDHEIRLDAAALPPIVTWGTSPEDVISITGKVPNPADIADEAKRLSKERALAYMGLNPGTKITDIKIDRMFIGSCTNGRIEDLRAAAKV--AEGKTVNA-------------NVNAIIVPGSGLVKEQAEAEGLDKIFIAAGFEW-REPGCSMCLAMNPDKLAPDER---CASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 469          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_BRUC25.509e-1933.073-isopropylmalate dehydratase large subunit OS=Bru... [more]
LEUC_BRUAB5.509e-1933.073-isopropylmalate dehydratase large subunit OS=Bru... [more]
LEUC_BRUA25.509e-1933.073-isopropylmalate dehydratase large subunit OS=Bru... [more]
LEUC_BRUA15.509e-1933.073-isopropylmalate dehydratase large subunit OS=Bru... [more]
LEUC_NITWN7.195e-1931.233-isopropylmalate dehydratase large subunit OS=Nit... [more]
LEUC_RHISN9.397e-1931.623-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_AGRVS9.397e-1930.833-isopropylmalate dehydratase large subunit OS=Agr... [more]
LEUC_RHOP21.603e-1832.023-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC_RHOPS2.094e-1832.413-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC_RHOP52.734e-1834.823-isopropylmalate dehydratase large subunit OS=Rho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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