CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SOLUE (3-isopropylmalate dehydratase large subunit OS=Solibacter usitatus (strain Ellin6076) GN=leuC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16
Identity = 62/143 (43.36%), Postives = 75/143 (52.45%), Query Frame = -2
Query:  267 IDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 689
            ID V+IGSCT  +  D   AA   L  G+KV  KV   +VP +Q+V        +P        +IF  AGCD    P C  C+    D  A        VST+NRNF GR G K G+ +LASP TAAASA+TG VTD R  L
Sbjct:  339 IDVVFIGSCTNSRISDLRTAAG--LLKGRKVSPKVRVMVVPGSQEVKRQAIAEGLP--------EIFRAAGCDY-REPGCSMCIAMNGDQLAPGE---YSVSTSNRNFEGRQG-KGGRTFLASPLTAAASAITGVVTDVRTLL 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PROMH (3-isopropylmalate dehydratase large subunit OS=Proteus mirabilis (strain HI4320) GN=leuC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16
Identity = 79/253 (31.23%), Postives = 107/253 (42.29%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLPYEPVY-----------SDEKASFLSEYRFDISKLEPLVA-------------------KPHSPDNRALAREC------------KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            V  D TTF YL+ +   P  P++           SDE A F +    + +++ P V                      + P  RA A +              D+ ID+V+IGSCT  + ED  AAAK+  A G KV                V  + VPGSG        +   +IF EAG +    P C  CL    D   R+N    C ST+NRNF GR G + G+ +L SP  AAA+A+ G+  D R F
Sbjct:  233 VAPDETTFAYLKGRQFAPQAPLWDEAVAYWKTLKSDEDAIFDATVTINAAEIAPQVTWGTNPGQVIAIDQIVPRLNSFNDPVERASAEKALAYMGLTEGVNLTDITIDKVFIGSCTNSRIEDLRAAAKI--AKGHKVA-------------SHVQAIVVPGSGPVKAQAEAEGLDKIFIEAGFEW-RLPGCSMCLAMNND---RLNPGERCASTSNRNFEGRQG-RGGRTHLVSPAMAAAAAIHGHFADIRTF 465          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_AGRRK (3-isopropylmalate dehydratase large subunit OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=leuC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.559e-16
Identity = 78/253 (30.83%), Postives = 108/253 (42.69%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D TTF+Y++ K   P           ++ + +DE A +      D + L P+V+   SP++                        RAL            ++ IDRV+IGSCT G+ ED  A AKV    GK V                V  + VPGSG        +   +IF+ AG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  236 IAPDETTFEYIKGKPRSPTGEALEQAIAYWKTLQTDEGAHYDRVVVLDAAALPPIVSWGSSPEDVVSVQGIVPNPDEIQDENKRTSKWRALDYMGLKPGTPMTEINIDRVFIGSCTNGRIEDLRAVAKV--VEGKTVA-------------STVDAMIVPGSGLVKEQAEAEGLDKIFKAAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PROM0 (3-isopropylmalate dehydratase large subunit OS=Prochlorococcus marinus (strain MIT 9301) GN=leuC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 69/243 (28.40%), Postives = 104/243 (42.80%), Query Frame = -2
Query:  267 DGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVA------------------KPHSPDNRALAREC------------KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 872
            D  TF Y+++K   P           ++ + SD  + +    + D SK+EP V                   +  SPD++ +A+E             KD  ID  +IGSCT G+  D   AAKV         +  F+VP ++KV  +           +   +IF +AG      P C  CL    D   ++    +  S++NRNF GR G   G+  L SP   AA+A++G VTD R F+
Sbjct:  237 DEKTFSYIKNKLCAPRNENWDEALLWWKSLKSDANSIYDDVTKIDASKVEPTVTWGITPGQSVGINQKIPLLEELSPDDQFVAKEAYEYMGFKPGQSIKDTPIDVCFIGSCTNGRISDLRVAAKVVKDKKVSQNIKAFVVPGSEKVAKEAKI--------EGLDKIFLDAGFQW-REPGCSMCLAMNSD---KLIGNQLSASSSNRNFKGRQGSPNGRTLLMSPAMVAAAAISGKVTDIRNFM 467          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_NEIMA (3-isopropylmalate dehydratase large subunit OS=Neisseria meningitidis serogroup A GN=leuC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 78/251 (31.08%), Postives = 102/251 (40.64%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPD------------------------NRAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            V  D TT  Y++DK   P           +  + SDE A F  EYRF+   +EP V    SP+                         RAL            ++ +D V+IGSCT  + ED   AA +     K   V   L+              VPGSG        +   +IF EAG +    P C  CL    D   R+     C ST+NRNF GR G+  G+ +L SP  AAA+A+TG  TD R
Sbjct:  235 VAVDQTTIDYVKDKPFAPEGEAWDKAVEYWRTLVSDEGAVFDKEYRFNAEDIEPQVTWGTSPEMVLDISSKVPNPAEETDPVKRSGMERALEYMGLEAGTPLNEIPVDIVFIGSCTNSRVEDLREAAAIAKDRKKAANVQRVLI--------------VPGSGLVKEQAEKEGLDKIFIEAGFEW-REPGCSMCLAMNAD---RLTPGQRCASTSNRNFEGRQGN-GGRTHLVSPAMAAAAAVTGRFTDIR 466          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_KINRD (3-isopropylmalate dehydratase large subunit OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=leuC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 77/245 (31.43%), Postives = 102/245 (41.63%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            V  D TTF YLE +   P           +  + +D+ A F +E   D S LEP V    +P                          RAL           +D+ +D V+IGSCT  + ED  AAA V     K   V   +VP + KV      L     G  T   +F+E G D   +  C  CLG   D  A       C ST+NRNF GR G K G+ +L SP  AAA+A+ G ++ P +
Sbjct:  237 VAPDETTFAYLEGRPHAPQGADWDAAVEYWRTLRTDDDAEFDAEVVLDGSALEPFVTWGTNPGQGVPLSGSVPEPERIGDDGVRQGVERALEYMGLEGGTPMRDIAVDTVFIGSCTNSRIEDLRAAADVVRGRRKADSVRVMVVPGSAKV-----RLQAEAEGIDT---VFKEFGADWRFA-GCSMCLGMNPDQLAPGER---CASTSNRNFEGRQG-KGGRTHLVSPLVAAATAVRGTLSSPAD 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_HAEPS (3-isopropylmalate dehydratase large subunit OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=leuC PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.342e-16
Identity = 80/251 (31.87%), Postives = 110/251 (43.82%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RALAR-------ECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            +  D TTF YL+D+ S P           ++ +++DE A F +    + S++EP V    +P +                        +ALA        +  DV ID+V+IGSCT  + ED  AAA V  A G+KV                V  L VPGSG        +   +IF EAG +    P C  CL    D   R+     C ST+NRNF GR G + G+ +L SP  AAA+A+ G   D R
Sbjct:  233 IAPDETTFAYLKDRPSAPKGKDWDDAVAYWKTLHTDEGAEFDTVVTLEASEIEPQVTWGTNPGHVIGINETIPNPADMADPIERQSAEKALAYMGLPHSIKLTDVAIDKVFIGSCTNSRIEDLRAAAAV--AKGRKVA-------------DGVQALVVPGSGLVREQAEKEGLDKIFIEAGFEW-RQPGCSMCLAMNND---RLEPGERCASTSNRNFEGRQG-RGGRTHLVSPAMAAAAAVHGKFVDIR 463          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SILPO (3-isopropylmalate dehydratase large subunit OS=Silicibacter pomeroyi GN=leuC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 74/253 (29.25%), Postives = 113/253 (44.66%), Query Frame = -2
Query:  267 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN-----------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 881
            +  D TTF Y++ +   P           ++ +YSD+ A F         ++EP+V    SP++                       R++        ++  D++ID V+IGSCT G+ ED  A A+V    GKK+K               +  + VPGSG        +  + I ++AG +   +  C  CL    D  A       C +T+NRNF GR G+K G+ +L SP  AAA+ALTG +TD RE +
Sbjct:  236 IAPDQTTFDYVKGRPHAPKGAQWEAALAWWKTLYSDDGAHFDKIVTLKGEEIEPVVTWGTSPEDVLPITGVVPSPEDFTGGKVEAARRSIEYMGLTPGQKLTDIEIDTVFIGSCTNGRIEDLRAVAEV--VKGKKIK-------------SGLRAMVVPGSGLVRAQAEEEGIADILKDAGFEWRLA-GCSMCLAMNPDQLAPGER---CAATSNRNFEGRQGYK-GRTHLVSPAMAAAAALTGKLTDVRELI 468          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RHIPU (3-isopropylmalate dehydratase OS=Rhizomucor pusillus GN=LEUA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 65/170 (38.24%), Postives = 88/170 (51.76%), Query Frame = -2
Query:  273 LEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 761
            L+ +  KP++P         ++VKID+V+IGSCT  + ED  AAA +  A G+ V             W  VY + VPGSG        +   +IF+EAG D      C  CLG   D   ++     C ST+NRNF GR G   G+ +L SP  AAA+A+TGY TD R+
Sbjct:  329 LDYIGLKPNTP--------MQEVKIDKVFIGSCTNSRIEDLRAAAAI--AKGRHV-----------ADW--VYAMVVPGSGLVKKQAEQEGLDRIFKEAGFDW-REAGCSMCLGMNPD---QLKPGERCASTSNRNFEGRQG-AGGRTHLMSPAMAAAAAVTGYFTDVRK 470          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_RHIL3 (3-isopropylmalate dehydratase large subunit OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=leuC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 78/253 (30.83%), Postives = 109/253 (43.08%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP-----------YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDN------------------------RAL-------ARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSG-------GKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            +  D  TF+Y++ K   P           ++ + +DE A +      D + L P+V+   SP++                        RAL         +  D+ +DRV+IGSCT G+ ED    AKV    GK V  PT            V  + VPGSG        +   +IF+ AG D    P C  CL    D   R+     C ST+NRNF GR G K G+ +L SP  AAA+A+ G+  D RE+
Sbjct:  236 IAPDEKTFEYIKGKPRAPKGEALEQAIAYWKTLQTDEGAHYDRVVVLDAASLPPIVSWGSSPEDVISVQGIVPNPDDIPDETKRTSKWRALDYMGLKPGTKMTDITLDRVFIGSCTNGRIEDLREVAKV--VEGKTV-APT------------VDAMIVPGSGLVKEQAEAEGLDKIFKAAGFDW-REPGCSMCLAMNDD---RLKPGERCASTSNRNFEGRQGFK-GRTHLVSPAMAAAAAIAGHFVDIREW 468          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_SOLUE2.559e-1643.363-isopropylmalate dehydratase large subunit OS=Sol... [more]
LEUC_PROMH2.559e-1631.233-isopropylmalate dehydratase large subunit OS=Pro... [more]
LEUC_AGRRK2.559e-1630.833-isopropylmalate dehydratase large subunit OS=Agr... [more]
LEUC_PROM03.342e-1628.403-isopropylmalate dehydratase large subunit OS=Pro... [more]
LEUC_NEIMA3.342e-1631.083-isopropylmalate dehydratase large subunit OS=Nei... [more]
LEUC_KINRD3.342e-1631.433-isopropylmalate dehydratase large subunit OS=Kin... [more]
LEUC_HAEPS3.342e-1631.873-isopropylmalate dehydratase large subunit OS=Hae... [more]
LEUC_SILPO4.365e-1629.253-isopropylmalate dehydratase large subunit OS=Sil... [more]
LEUC_RHIPU4.365e-1638.243-isopropylmalate dehydratase OS=Rhizomucor pusill... [more]
LEUC_RHIL34.365e-1630.833-isopropylmalate dehydratase large subunit OS=Rhi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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