CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_THEYD (3-isopropylmalate dehydratase large subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=leuC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.018e-29
Identity = 77/202 (38.12%), Postives = 111/202 (54.95%), Query Frame = -2
Query:  273 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 872
            D  T +Y++ +   PY+   SD+ A +     +D S++ P+VA PH P N   A E   +KID+V IGSCT G+ ED   AA V    G+KV  +V   ++PATQK++M            +   +IF +A     + P+CG CLGG     A+       ++TTNRNF GRMGH E ++YL++P  AAAS + G +  P E
Sbjct:  231 DKITEEYVKLRAKRPYKIYNSDQDAKYFEIKEYDCSRIPPVVACPHLPSNVKPANELSHIKIDQVVIGSCTNGRLEDLREAAMVL--KGRKVHPEVRMIIIPATQKIYMQALK--------EGLIEIFIDAQA-VVSPPTCGPCLGGHMGILAKGER---AIATTNRNFVGRMGHPESEVYLSNPAVAAASGVLGRIGTPEE 418          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_METS5 (3-isopropylmalate dehydratase large subunit OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=leuC PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.018e-29
Identity = 78/200 (39.00%), Postives = 107/200 (53.50%), Query Frame = -2
Query:  273 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 872
            D  T  Y++       E V  D  A +L E+  ++ KLEPLVA P+S DN   ARE   V +D+VYIGSCT G+  DF  A+++    GKKVK     +P++  ++     +           +    AGC      +CG CLGG    +       V VST++RNF GRMG  E ++YL+ P  AAASA TGY+TDPR+
Sbjct:  228 DVETKDYIKTMRGKEVELVTPDPGAKYLDEHTIELDKLEPLVAAPYSVDNVKTAREESKVPVDQVYIGSCTNGRLSDFRIASEIL--KGKKVKTRCIAIPSSYTMFKQAMEMGY--------IEDLVNAGC-VVTYGTCGPCLGG---HFGVAGPGEVIVSTSSRNFRGRMGSNEAKVYLSGPSVAAASAATGYITDPRD 413          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PYRIL (3-isopropylmalate dehydratase large subunit OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=leuC PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.443e-29
Identity = 77/202 (38.12%), Postives = 112/202 (55.45%), Query Frame = -2
Query:  267 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 872
            D  T  YL+ +  + Y+P    +   ++ +Y  ++SKLEPLVA P+S DN    RE + V++D+V+IGSCT G+  DF  AA++      +VK     +PA+  ++     L            I  +AGC      +CG CLGG    +       V VST+NRNF GRMGH + ++YLA+P TAAA+AL G + DPR +L
Sbjct:  227 DVVTVDYLQRERGVSYKPP-DLQPGRYVDKYVVELSKLEPLVAAPYSVDNVKAVREVEGVEVDQVFIGSCTNGRLSDFEIAARILRRG--RVKSRCIAIPASYTIFRKALELGY--------IDILTKAGC-VVTYGTCGPCLGG---HFGVAGPGEVVVSTSNRNFKGRMGHPDSKVYLANPATAAAAALEGKIVDPRPYL 413          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_THENV (3-isopropylmalate dehydratase large subunit OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=leuC PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.873e-29
Identity = 76/202 (37.62%), Postives = 111/202 (54.95%), Query Frame = -2
Query:  267 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 872
            D  T  YL+ +  + Y+P  S E   ++  Y  ++ +LEPLVA P+S DN   ARE + V++D+V+IGSCT G+  DF  AA+V      + K     +PA+  V+     L            +  +AGC      +CG CLGG    +       V V+T+NRNF GR+GH + ++YLA+P TAAA+AL G + DPR +L
Sbjct:  227 DEVTADYLQRERGVSYKPP-SLEPGRYVDRYEVELQRLEPLVAAPYSVDNVKAAREVEGVEVDQVFIGSCTNGRLSDFEVAARVLKRG--RAKARCIAIPASYAVFRRAMELGY--------IDVLTKAGC-VVTYGTCGPCLGG---HFGVAGPGEVVVTTSNRNFKGRVGHPDSKVYLANPATAAAAALEGKIVDPRPYL 413          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SULSO (3-isopropylmalate dehydratase large subunit OS=Sulfolobus solfataricus GN=leuC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.670e-29
Identity = 75/199 (37.69%), Postives = 106/199 (53.27%), Query Frame = -2
Query:  276 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 872
            D  T +Y+++      E V  D  A ++ EY   + ++EPLVA PHS DN  +  E +   +D+VYIGSCT G+  DF  AAK+    GKKVK     +PA+ +++ +           +   Q   +AGC      +CG CLGG    +         VST++RNF GRMG  E ++YL+ P  AA SAL G +TDPR
Sbjct:  230 DQETKRYIKEMRGYEPELVTPDNGAKYVDEYTIQLDEMEPLVAAPHSVDNVKVVNELEGTPVDQVYIGSCTNGRLSDFEIAAKIM--KGKKVKSRCIAIPASYRMFKEALE--------RGYIQTLVDAGCIVTYG-TCGPCLGG---HFGIAGPGENIVSTSSRNFKGRMGSNEAKVYLSGPAVAAISALEGKITDPR 414          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_NITSB (3-isopropylmalate dehydratase large subunit OS=Nitratiruptor sp. (strain SB155-2) GN=leuC PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.670e-29
Identity = 85/209 (40.67%), Postives = 116/209 (55.50%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEPV--YSDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECK-DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D  T  +L DK  L  EP   YSDE A +      D++ LEP++A PH P N R ++   K D+K+D+V+IGSCT G+  D   AA++    G+KV   T ++  PATQK+  +           +    I  +AG    ++P+CGACLGG     A       CVSTTNRNF GRMG +  +IYLA+   AAASA+ G + DPRE
Sbjct:  227 IAVDEVTKAFLADKP-LAREPKIHYSDEDAEYEQVIEIDVNNLEPVIAFPHLPSNGRPISEAAKMDLKVDQVFIGSCTNGRLSDIAIAAEIL--KGRKVARHTRMIVTPATQKILKEAEK--------RGYIDILIDAGA-VVSNPTCGACLGGYMGILADNER---CVSTTNRNFVGRMGARTSEIYLANSAVAAASAVAGKIADPRE 420          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_SULSY (3-isopropylmalate dehydratase large subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=leuC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.002e-28
Identity = 74/203 (36.45%), Postives = 107/203 (52.71%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D  T  ++  +T+  ++   SD  A +  EY FD SK+EP+VA P  P N     E     ID+V+IGSCT G+  D   AA +  +     +V   ++PA+ +++             +   +I  +AGC    S +CG CLGG     A   E  VC+ST+NRNF GRMGH + Q+YL+SP  AAASA+ G +  P E
Sbjct:  228 IEPDEKTVDWVRKRTNREFKLYKSDPDAKYCCEYEFDASKIEPVVACPSLPSNVKPVSEVAGTHIDQVFIGSCTNGRLSDLRIAAAILKSKKVHPEVRCIVIPASDQIYKQAL--------HEGIIEILADAGCLISTS-TCGPCLGGHMGILA---EGEVCLSTSNRNFVGRMGHPKSQVYLSSPAVAAASAVLGRIAHPDE 418          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CLOD6 (3-isopropylmalate dehydratase large subunit OS=Clostridium difficile (strain 630) GN=leuC PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.002e-28
Identity = 83/211 (39.34%), Postives = 113/211 (53.55%), Query Frame = -2
Query:  267 PADGTTFKYLED---KTSLPYEPVY-SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC-KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 878
            P D  T +Y+      T      +Y +DE A +   Y  D++KL+  VA PH P+N     E  KD+KID+V IGSCT G+  D    A++    GKKV   V   + P TQKV+++           K     F EAG    ++P+CG CLGG     A   +    +STTNRNF GRMGH + ++YLASP  AAASA+TG ++ P E +
Sbjct:  229 PVDDKTMEYINSHKCSTMTKDVNIYEADEDAVYDEVYEIDLAKLKETVAFPHLPENTRTVDEIDKDIKIDQVVIGSCTNGRISDLEVVAEIM--KGKKVADGVRVMIFPGTQKVYLEAIE--------KGYITTFIEAGAAV-STPTCGPCLGGHMGILAAGEKS---ISTTNRNFVGRMGHVDSEVYLASPAVAAASAITGKISKPSEII 425          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_THEPX (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter sp. (strain X514) GN=leuC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.308e-28
Identity = 76/202 (37.62%), Postives = 108/202 (53.47%), Query Frame = -2
Query:  273 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 872
            D  T  Y++ +    Y+    DE A +   Y  ++ ++ P VA PH P+N     E   VKID+V IGSCT G+  D   A K+    GKKV   V   + PATQ+++++           +   + F +AG    ++P+CG CLGG     AR       ++TTNRNF GRMGH E ++YL+SP  AAASA+ GY+  P E
Sbjct:  229 DEITEAYVKGRAKREYKVFERDEDAEYSEVYEINLDEIRPQVAFPHLPENTRSIDEVGKVKIDQVVIGSCTNGRLSDMEIAYKIL--KGKKVHPDVRLLIFPATQEIYLECVK--------RGYIEEFIKAGA-AVSTPTCGPCLGGHMGILARGER---ALATTNRNFVGRMGHPESEVYLSSPAVAAASAIAGYIVSPEE 416          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CAMHC (3-isopropylmalate dehydratase large subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=leuC PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.308e-28
Identity = 84/208 (40.38%), Postives = 115/208 (55.29%), Query Frame = -2
Query:  276 VPADGTTFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPR 881
            + AD  T ++ +DK +L  EP   YSDE A +      D+S LEP+VA P  P N     +    ++KID+ +IGSCT G+  D   AA++    GKKV   T L+  PATQK++          +  +    IF +AG    ++P+CGACLGG             CVSTTNRNF GRMG +  ++YLA+    AASA+TG +TDPR
Sbjct:  226 IAADEITKQFFKDK-NLRAEPKYFYSDEDAFYERTVEIDMSALEPMVAYPFLPSNGKTITQAVADELKIDQAFIGSCTNGRLSDLRIAAEIL--KGKKVAKKTRLIITPATQKIYK--------AAEHEGLIDIFIDAGA-VVSNPTCGACLGGYMGILGANER---CVSTTNRNFVGRMGDRTSEVYLANSAVVAASAITGKITDPR 418          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_THEYD2.018e-2938.123-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_METS52.018e-2939.003-isopropylmalate dehydratase large subunit OS=Met... [more]
LEUC_PYRIL3.443e-2938.123-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC_THENV5.873e-2937.623-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_SULSO7.670e-2937.693-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_NITSB7.670e-2940.673-isopropylmalate dehydratase large subunit OS=Nit... [more]
LEUC_SULSY1.002e-2836.453-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_CLOD61.002e-2839.343-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_THEPX1.308e-2837.623-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_CAMHC1.308e-2840.383-isopropylmalate dehydratase large subunit OS=Cam... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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