CB290757

Overview
NameCB290757
Unique NameCB290757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12322 contig Csv1_Contig12322:302..1183. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_WOLSU (3-isopropylmalate dehydratase large subunit OS=Wolinella succinogenes GN=leuC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.232e-28
Identity = 77/207 (37.20%), Postives = 114/207 (55.07%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEPVY--SDEKASFLSEYRFDISKLEPLVAKPHSPDN-RALARECKD-VKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            + AD  T ++L  + SL  EP Y  +D  A +      D+ KLEP++A P  P N +++++  KD +KID+ +IGSCT G+  D   AA++         V   + P TQ+++ D +         +       EAG    ++P+CGACLGG       + +   CVSTTNRNF GRMG +  ++YLA+   AAASAL G +TDPR+
Sbjct:  227 IAADSITKEFLASRKSLRAEPKYYQADADALYEQTIEIDVEKLEPVIAYPFLPSNGKSISQAVKDDLKIDQAFIGSCTNGRLSDLRIAAQILKGKRVHPDVRLIITPGTQQIYKDAHQ--------EGLIDTLLEAGA-LISNPTCGACLGGYMGI---LGDNERCVSTTNRNFVGRMGARSSEVYLANSAVAAASALKGKITDPRK 421          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PYRAE (3-isopropylmalate dehydratase large subunit OS=Pyrobaculum aerophilum GN=leuC PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.232e-28
Identity = 75/202 (37.13%), Postives = 111/202 (54.95%), Query Frame = -2
Query:  267 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 872
            D  T +YL+ +  + Y P    E  ++  +Y  ++ +LEPLVA P+S DN    RE + V++D+V+IGSCT G+  D   AAK+    G++VK     +PA+ +V+     L            +  EAGC      +CG CLGG    +       V V+T+NRNF GR+GH + +IYLA+P  AAA+A  G + DPR +L
Sbjct:  227 DVITAEYLKTERGVDYTPPRI-EPGNYADKYTVELPRLEPLVAAPYSVDNIKSVREVEGVEVDQVFIGSCTNGRLSDIAVAAKIL--KGRRVKSRCIAIPASYEVFRRAMKLGY--------IDVLTEAGC-VVTYGTCGPCLGG---HFGVAGPGEVVVTTSNRNFRGRVGHPDAKIYLANPAVAAATAAEGKIADPRPYL 413          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC2_DEIRA (3-isopropylmalate dehydratase large subunit 2 OS=Deinococcus radiodurans GN=leuC2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.232e-28
Identity = 79/214 (36.92%), Postives = 111/214 (51.87%), Query Frame = -2
Query:  270 VPADGTTFKYLEDKTSLP--YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLG------GPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREF 881
            V  D TT  Y++ +   P  Y    SD  A +      D +++EP VA PH P N  +A   + +++   Y+GSCT G+  D    A++    G+KV   V   +VPATQ +W          +  +   +IF +AG    + PSCGACLG      GP D         +C+S++NRNF GRMG    QIYLASP T AASA+ G++ DPR +
Sbjct:  228 VAVDDTTRAYMQQRGVSPEQYTEYQSDPDAKYKVVVEIDAAQVEPTVAYPHIPSNGRVAGSDR-IRVTHAYVGSCTNGRITDLRDVARIL--KGRKVAQDVQMIVVPATQAIWKQ--------AAQEGLLEIFVDAGASV-SYPSCGACLGMHSGVLGPDD---------ICISSSNRNFVGRMGDPSAQIYLASPATVAASAVEGFIADPRRY 420          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC1_PYRAB (3-isopropylmalate dehydratase large subunit 1 OS=Pyrococcus abyssi GN=leuC1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.232e-28
Identity = 76/210 (36.19%), Postives = 115/210 (54.76%), Query Frame = -2
Query:  264 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRA-LARECK-DVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVK--VPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 881
            +  D  T  Y++++    ++   SDE A +     +D++  EP+VA PH P+N   +++  K ++KID+V+IGSCT G+ ED   AA++    G+KV   V   ++P +  V+             +   +IF EAG      P+CG CLGG     A        VSTTNRNF GRMGH + ++YLA+PY AAASA+ G +  P E ++
Sbjct:  228 IEPDKKTLDYVKERAKRKFKVYKSDEDAKYYKVIEYDVTNWEPVVAFPHLPENTVPISKAAKMNIKIDQVFIGSCTNGRIEDLRMAAEIL--EGQKVAKWVRLIVIPCSPTVYWKALK--------EGLIEIFLEAGA-VIGPPTCGPCLGGHMGVLASGER---AVSTTNRNFVGRMGHPKSEVYLANPYVAAASAVLGRIASPEEVVK 423          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_PYRCJ (3-isopropylmalate dehydratase large subunit OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=leuC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.915e-28
Identity = 75/202 (37.13%), Postives = 110/202 (54.46%), Query Frame = -2
Query:  267 DGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 872
            D  T  YL +   + Y+P        +  EY  ++ +LEPLVA PHS DN     E + +++D+V+IGSCT G+  D   AAK+ L  G+ VK     +PA+  V+     L            +  +AGC      +CG CLGG    +       V ++T+NRNF GR+GH + ++YLA+P  AAA+ALTG +TDPR++L
Sbjct:  227 DEVTVAYLHEARGVSYKPPALGG-GKYADEYTVELGRLEPLVAAPHSVDNVKAVAEVEGIEVDQVFIGSCTNGRLSDIEVAAKI-LRHGR-VKARCIAIPASYDVFRRAMELGYV--------DVLTKAGCVVTYG-TCGPCLGGH---FGVAGPGEVVLTTSNRNFKGRVGHPDSKVYLANPAVAAATALTGRITDPRQYL 413          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_ELUMP (3-isopropylmalate dehydratase large subunit OS=Elusimicrobium minutum (strain Pei191) GN=leuC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.915e-28
Identity = 70/188 (37.23%), Postives = 106/188 (56.38%), Query Frame = -2
Query:  264 YEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFLE 827
            ++ + +DE A +    + D S LEP V+ PH+ DN     E KD+K+++V+IG+CT G+ ED   AA++           TF+ PA++ V +            +   +IF +AG     +P CG C+G        + +  VC++T NRNF GRMG+ +G IYL+SP  AA SAL GY++DPRE L+
Sbjct:  243 FKLISADEGADYEKVIKIDASSLEPTVSCPHTVDNTKTVGELKDIKVNQVFIGTCTNGRIEDLRIAAEILKDKKVNPGTRTFITPASRDVMLAALK--------EGLIEIFVKAGASV-QTPGCGPCVGVHGGI---LGDGEVCLATQNRNFQGRMGNTKGFIYLSSPAVAAYSALKGYISDPREILK 418          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_METJA (Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii GN=leuC PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.806e-28
Identity = 77/209 (36.84%), Postives = 109/209 (52.15%), Query Frame = -2
Query:  273 VPADGTTFKYLEDK-----TSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV-KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D  T +Y+++      T  P+E +  DE A F   Y  +  K+EP+ A PH+ DN   ARE     ID+V+IGSCT G+ ED   A K+    G     V   + PA+++ ++            +   + F + GC    +PSC AC+G     Y  +    VCVST+NRNF GR G  E +IYLASP TAAA A+ G + DPR+
Sbjct:  227 IEPDEKTIQYVKEAMKKHGTERPFEVIKGDEDAEFAEVYEIEADKIEPVFACPHNVDNVKQAREVAGKPIDQVFIGSCTNGRLEDLRMAIKIIEKHGGIADDVRVVVTPASREEYLKALK--------EGIIEKFLKYGC-VVTNPSCSACMG---SLYGVLGPGEVCVSTSNRNFRGRQGSLEAEIYLASPITAAACAVKGELVDPRD 423          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_METB6 (3-isopropylmalate dehydratase large subunit OS=Methanoregula boonei (strain 6A8) GN=leuC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.108e-27
Identity = 72/203 (35.47%), Postives = 112/203 (55.17%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEPVYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            VP D  T++Y++ +  +    + SD+ A F  +  ++++ LEP VA PH+ D      + +   ID+V+IGSCT G+ ED + AA+V        KV   ++PA++  ++      +         + F  AG    A P CG C+GG   ++  +    V ++T+NRNF GR G  EG++YL SP TAAASA+ G +TDPRE
Sbjct:  225 VPPDKVTWEYMKGRRKITPFALASDDDAKFAEKRTYNVADLEPQVAVPHNVDQGIPVGKVEGTHIDQVFIGSCTNGRYEDLVEAAEVLGKKKFDPKVRVLVIPASRDEYLKALEAGL--------VERFVRAGALVEA-PCCGPCMGG---SFGLIAAGEVSLATSNRNFRGRQGSTEGKVYLCSPATAAASAIKGEITDPRE 415          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_CAMC5 (3-isopropylmalate dehydratase large subunit OS=Campylobacter curvus (strain 525.92) GN=leuC PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.108e-27
Identity = 83/209 (39.71%), Postives = 113/209 (54.07%), Query Frame = -2
Query:  273 VPADGTTFKYLEDKTSLPYEP--VYSDEKASFLSEYRFDISKLEPLVAKPHSPDNRALAREC--KDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKVKVPTFLV--PATQKVWMDVYTLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPRE 881
            +  D TT ++L+ K +L  EP   YSDE A +         KL+P++A P  P N    RE    D+ ID+ +IGSCT G+  D   AA++    G+KV   T L+  PATQK+ +         +  +    IF EAG    ++P+CGACLGG             CVSTTNRNF GRMG +  ++YLA+   AAASA+ G + DPRE
Sbjct:  227 IAVDETTREFLKGK-NLRAEPKFFYSDEGAGYERVLEIYADKLDPVIAYPFLPSNGKSVREAVKDDIAIDQAFIGSCTNGRLSDLRIAAEIL--KGRKVSRKTRLIITPATQKIAL--------AAQKEGLMDIFVEAGA-VVSNPTCGACLGGYMGILGAGER---CVSTTNRNFVGRMGDRTSEVYLANSAVAAASAIAGKIADPRE 420          
BLAST of CB290757 vs. ExPASy Swiss-Prot
Match: LEUC_GEOSL (3-isopropylmalate dehydratase large subunit OS=Geobacter sulfurreducens GN=leuC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.889e-27
Identity = 79/185 (42.70%), Postives = 103/185 (55.68%), Query Frame = -2
Query:  267 SDEKASFLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFLAAAKVFLASGKKV--KVPTFLVPATQKVWMDVYTLPVPGSGGKTCSQIFEEAG-CDTPASPSCGACLGGPKDTYARMNEPMVCVSTTNRNFPGRMGHKEGQIYLASPYTAAASALTGYVTDPREFL 812
            SDE A +     FD+S LEP+V   + PD      E     +D+VY+GSCT G+ ED   AA++    GKK+   V   L PAT K++ D           +    IF EAG C T  +P+CGACLG      A   E  VC STTNRNF GRMG K G ++L SP T+AA+A+ G + DPR++L
Sbjct:  259 SDEDAVYEQVLDFDVSSLEPIVTFGYKPDQVKPVSEIAGTPVDQVYLGSCTNGRLEDLRIAARIL--KGKKIAPTVRGILSPATPKIYQDAMR--------EGLIDIFMEAGFCVT--NPTCGACLGMSNGVLA---EGEVCASTTNRNFMGRMG-KGGMVHLMSPATSAATAIEGKIADPRKYL 427          
The following BLAST results are available for this feature:
BLAST of CB290757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_WOLSU2.232e-2837.203-isopropylmalate dehydratase large subunit OS=Wol... [more]
LEUC_PYRAE2.232e-2837.133-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC2_DEIRA2.232e-2836.923-isopropylmalate dehydratase large subunit 2 OS=D... [more]
LEUC1_PYRAB2.232e-2836.193-isopropylmalate dehydratase large subunit 1 OS=P... [more]
LEUC_PYRCJ2.915e-2837.133-isopropylmalate dehydratase large subunit OS=Pyr... [more]
LEUC_ELUMP2.915e-2837.233-isopropylmalate dehydratase large subunit OS=Elu... [more]
LEUC_METJA3.806e-2836.84Isopropylmalate/citramalate isomerase large subuni... [more]
LEUC_METB61.108e-2735.473-isopropylmalate dehydratase large subunit OS=Met... [more]
LEUC_CAMC51.108e-2739.713-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_GEOSL1.889e-2742.703-isopropylmalate dehydratase large subunit OS=Geo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01dd06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01dd06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290757 ID=CB290757; Name=CB290757; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTTTAATTTTTTCTCTTATAAATTTTATGCTATTTAT
TGTACTAATTATTGTACATACCTCATTATTCCTATTTTATTAGTACAAAA
TTAACAGTCACAATGTGTCATAACATACAAAATATGCTTGAAGAAGCAAG
GGAAAACAGTTCTTCAGATCTAAGTCACATCCACATAGCCCTTGTCCCTC
GGCAAGAAGAATATGATATCACATAGTGTACATACGTGATCGATTCAGTA
TTTGATCAGTCTACTCCAAGAACTCCCTTGGATCAGTGACATAACCAGTC
AAAGCAGATGCTGCAGCTGTGTATGGAGAAGCAAGATATATTTGGCCTTC
CTTGTGTCCCATCCGTCCAGGGAAGTTCCTATTTGTCGTGGAGACACAGA
CCATAGGTTCATTCATGCGTGCATAAGTGTCTTTAGGGCCACCCAAACAA
GCACCGCAACTAGGACTCGCAGGTGTGTCGCAACCAGCTTCTTCAAATAT
CTGAGAGCAAGTCTTGCCACCAGATCCTGGTACTGGAAGAGTGTATACGT
CCATCCATACCTTTTGGGTAGCAGGGACAAGAAATGTTGGAACTTTGACC
TTTTTGCCTGAAGCTAAGAAGACTTTCGCTGCAGCAAGAAAGTCTTCTGT
TTTTCCACCAGTGCAAGATCCAATGTATACTCTGTCAATTTTTACATCTT
TGCACTCTCTTGCTAAAGCCCGATTGTCAGGAGAATGAGGCTTTGCCACC
AGTGGCTCCAGCTTCGAGATATCAAATCTGTATTCGGACAGGAAACTTGC
TTTCTCATCACTATAAACTGGTTCATAGGGCAACGATGTCTTATCCTCAA
GATATTTAAATGTTGTACCATCAGCAGGGACT
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